Gene detail

Detailed information of ENSSJYP00000014925.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_015809087.2, coronin-2B isoform X2 [Nothobranchius furzeri]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000015613

CTCGAAATCATTGCCATACTAATAACTGAAGCTGAGGTTTGACCAGCGtcaaaatgccaaaaaaatttgttcGCGAGTCAAAATTCCGTCATGTTTACGGTGAACCATACAAGAAAGAAAGTTGTTACGAAGGCATTCCTATAACAAAGAACGCCTGGGATGGAAATTACTGCGCAGTCAATTCCAAATTCGTGGCAGTGGTACTTGAGTCTAGAGGCGGAGGAGCGTTCATTGTTCTTCCTCAACACCGGACTGGCCGCATCGATGCTAGTCATGCGAAAGTGTCCGGACATCGAAGCAGAGTATTGGACATTCAGTGGAATCCATTCGACGAGAATTTGATTGCTTCAGCATCAGAAGACTGCACAATCAAGGTTTGGAAGATTCCCGATGACGGATTAAAGAAAGATTTAACAGATGCTGCTGTTGAGTTGCATGGTCATAAACGTAAAGTAGGCTGCATCCAATGGCATCCTTTAGCTAACAACATCCTAGCGAGTTCTGGATTTGATAATAAGATTATCATATGGAACGTAGAAAGAGCTGAACCGGCCATAGTAATCGATGGTCATACGGATACAATCTACAGTATGAGCTGGAGTAAAGATGGTAACCTGCTCGCTACGACAAGTAAAGATAAGATGTTAAGGATAATTGATGCAAGAAGTGGTCATATCATTTCAGAACACAGAGCTCACGATGGCCCAAAGCAGTCACGTGTCTGCTTCATTGGCAACGACCGCGTCCTGACAACTGGCTTTTCAAGATCAAGCGAAAGGCAAATTTCATTGTGGGATATTAACAACCTGGAAGCTTCTCTTGTGACACTGTGCATTGACTATGGATCTGGAACATTACTGCCATTCTACGATCATGATACAAACATGATTTACCTGACTGGAAAGGGTGATGGTAACATCCGATATTACGAACTTTCTCCTGACtctccattcattcattatttacaCGAGTATCGAAGTTCTGCCTCGCAGCGCGGTTTTGGTTGCCTTCCAAAGAGAGCAGTGGATGTCAATTCCTGTGAAGTGTTTCGTTTTTACAAACTCCATCAAAATGGCCTATGCGAACCAATCTCCATGATCGTCCCTAGAAGATCTGATCATTTCCAAGAAGACCTATACCCTTTGACACAAGGAGATATTCAGTCGCTGGAAGCCGAAGAATGGCTAAGCGGAAAAAATGCAGAACCAATTatgatttcattgaaagaaggTTATCATCCTACGGAGAAGAATTTCGTAGCTGTTGAGACAAAACAAAGTGAATTCATTGAAATGTTTCCGCAGAAAGAACCACCTGCGAATGAAAAAGAGCTCCGAAAGGCATTCTACGACCATGAAGATGAAATTCGAAAGCTCAAAGAACTCCTTCAAGAACGCGACCTCAGGATTCGCCAGTTAGAAAGACAGTTATCAGACGAAGTGCATTGAAACTGTAACAAAACGTCAACAGTGTACTAAACATTCCCTGCTATCTAATGATTacttacatttttaaaaaaaagaaagaacgcCATTTTGTTTACAGACACCGGTTGTATTagaaaaattaggccttggtTACCACTCCAGGGGATGCCGGAGCCTATTTTTAAATGAGGGGGCGATTCAAGTTTGGGCGTGGCCATATTCGCATTTTTGTTTAGGCatggtcactcaagtttatgTTGGTGTCCGCTAggtcactcaagttcatgTTGATGCCCGCTAGAGGTCGATAAAagggtcaagacatgcccaagtattttgatggggataatggcaagaaggaCACAAGTGCAATAGACGAAGGTCAAATAGACTCTTGCGTATTTCGATTAGAAACGTATGCCTTTAATTAACACAACATATCGGTAGAAAGTGCGTGGGCTGAACCCCCCTCCATTTCGGCGTGCCTGGACTCACCAACGATGCCAAGTGAGATGCGAAGGGTTGTTGTGGAGATGACTATTTTCCTTGCCAAACACGAAAAAAGTGAGACACTTTGTAAAAGCGTTGCtataattggaaaaatatagttttatgcatagaaattttgaaaatttgataaaataatgcTACACGTTAAGAATGGGAAGCTCCAATTTGTATGACAAGAAATAGCAGCATTAACATTTATAGCATACGCCAATGCAGCATTGTACTTATAACAAAATGTTACGTTTATAATATATTAATTCCTGCTATACATGTTTATGAATGATATTGAATTAATTAAAGTTATAACTGAGTTGTATTGATATAGACAGACTTTAAATTTAACTGAATTGTTAAACgaatttaaagttttattgttaaattgAAGCAATGTAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UQ03	Coronin-2B OS=Homo sapiens OX=9606 GN=CORO2B PE=1 SV=4
Q8BH44	Coronin-2B OS=Mus musculus OX=10090 GN=Coro2b PE=1 SV=2
Q6DJD8	Coronin-2B OS=Xenopus laevis OX=8355 GN=coro2b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002136 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16300 all species →	WD40_4	Type of WD40 repeat	Repeat	Interproscan
PF08953 all species →	DUF1899	Domain of unknown function (DUF1899)	Repeat	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015048 all species →	Domain	Domain of unknown function DUF1899	Interproscan
IPR015505 all species →	Family	Coronin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10856 all species →	CORONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13887	CORO2; coronin-2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.