Gene detail

Detailed information of ENSSJYP00000015226.1 in Catostylus mosaicus

Genomic Location: chr5:6228096...6233450
NR annotation: MSP53152.1, ATP-dependent chaperone ClpB [Gammaproteobacteria bacterium]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSJYT00000015928

TTGGCCGCATTAAATGAAGGTGGCCAATTAGCgcatattttaaaagaagcGGGTGGTAATAAAAAAGCAATCGAAGctgcaattgaaaaattacgcGGAGGAGAAAACGTGAACGAACAGAATGCCGAAGAGCAACGCCAAGCAATCGAAAAGTATACGATTGATTTGACTGAACGTGCCGAGCAAGGAAAGTTAGATCCTGTAATTGGTCGAGATGAAGAGATTCGTCGTTGTGTGCAAGTATTACAACGCCGTACTAAAAATAATCCAGTGCTTATTGGTGAGCCTGGTGTAGGTAAAACGGCAATTGTTGAAGGTTTGGCGCAACGTATTGTTAACGGGGAAGTTCCCGATGGATTAAAAGATAAACGATTGTTATCTTTAGATTTAGGTTCTTTAATCGCTGGTGCAAAATTTCGTGGGGAATTTGAAGAGcgtttaaaagcattattaaaagatttagcaaaacaagaaggtcaaattattttgtttattgatgAAATCCATACCCTTGTCGGCGCAGGTAAAGCTGAAGGTGCAATGGATGCGGGTAATATGCTGAAGCCCGCGTTAGCACGTGGTGAGCTGCGCTGTGTTGGGGCGACTACTTTAGATGAGTATCGTcaatatattgaaaaagatGCAGCTTTAGAACGCCGTTTCCAGAAAGTGTTAGTTGATGAACCTTCGGTAGAAGATACGATTGCTATTTTACGTGGTTTAAAAGAACGCTATGAAGTGCATCATGGGGTTGATATTACCGATCCGGCCATTATTGCAGCGGCGACGATGTCGCAGCGTTACATTACTGATCGTCAATTACCTGATAAAGcaattgatttaattgatgAGGCAGCTTCACGTATTCGTATGGAAATTGATTCTAAACCGGAAGCGATGGATAAATTAGAGCGGCGCTtgattcaattaaaaattgaacgTGAAGcgatgaaaaaagaaaaagatgcgGCTTCAAAGAAACGCTTGCAAGATCTAGAAGATGAAATTAAGCGTTTGGAAAAAGAGTATTCTGACCTAGAAGAAGTTTGGAAAGCCGAAATGGCAAGCATGCGCGATAGTAATGAAATTCGTAATGAATTAGATCGTGCTCGGGTTGAGTTGGAAACAGCACGTCGTGCTAATGATTTAGCTCGCATGTCGGAACTCCAATATGGCAAAATTCCTGAATTAGAAAAGCAATTAGCCGCAGCCGATCAAGCAGAAAATCAAGAACAACCACAATTAGTTCGCAATAAAGTAACGACTGAAGAAATTGCAGAGGTGGTTGCCAAATGGACACATATTCCGGTGACCAAATTGATGGAAGGTGAGCGCGATAAGTTATTGCATATGGAAGCCGATTTACATGAAAAAGTAATCGGTCAGGATCAAGCAGTTGCTGCAGTAGCGAATGCGATTCGCCGTTCTCGTGCCGGTCTTTCCGATCCTAAGCGTCCGATTggctcttttttatttttagggcCAACTGGAGTAGGCAAGACTGAACTATCCAAAGCCTTAACAGATTTCATGTTCGATACCGAAGATGCAATGATACGAATCGATATGTCAGAGTTTATGGAAAAACATTCAGTAGCACGGCTAATTGGTGCACCGCCTGGATATGTCGGTTATGAAGAAGGAGGCTATCTTACTGAAGCGGTACGTCGACGCCCTTACTCCGTTATTTTAATGGATGAAGTTGAAAAAGCGCATGCCGAcgtatttaatattttgttacaAGTTTTGGATGATGGTCGTTTGACTGATGGACAAGGTCGTACCGTCGATTTTCGCAATACCGTGATTATTATGACTTCTAATTTAGGTTCCCATGTGATCCAGGAAATGGCGAACGATAAAGAGGGTTATGACAAAATGCGTGATGCAGTGATGGAAATTGCAGGACAACATTTTCGTCCCGAGTTTATTAATCGTATTGATGCATCTGTAGTATTTGAGCCGTTAAAAGCGGAGCAAATTCATAAAATTGCTGAGGTCCAAATTCAACTCTTGGCAAATCGacttaaagaaaaagatttacaATTAGAAGTGAGTGATGCAGCATATCAATATCTTGCCGATGCTGGTTATGATCCAGTTTACGGTGCGCGACCTTTAAAGCGTGCTATTCAAGTGCATATTGAAAACCCATTATTAATGGAGAAAATTATATTAATTACTGGCGCTAGCCGAGGTATTGGTGCAGCTACGGCATTGTTAGCAGCTGAGCGTGGTTATACTGTTTGTGTTAATTATCTTAACGATAAAGTCGCTGCGAATAAAGTAGTTGCACAAATAGAAGAAAAAGGTGGCAAGGCAATCGCCGTACGTGCAGATGTAAGTGTAGAAGTAATGAAATTATTCGCCACCATTGATCAAGAATTAGGTGCTTTAACTGCTTTAGTTAATAATGTTGGTATTATTCCAGCGAAATCTAAAATTGATGAGATTGATACAGTACgcttgcaaaaaatatttgcgACTAATGTGTTTAGTCAATTTTATTGTTGTCGTGAAGCAGTACGTCGAATGTCGACCGAGAAAGGAGGCAACGGTGGTGCTATTGTTAATATTTCATCAATGGCGACAGTGTTGGGTTCTGCTAATGAGTATGTTGATTATGCAGCAAGTAAAGGTGCTATCGATACCTTAACGCGTGGCTTAGCGTTGGAAGTTGCTGCAGAAGGTATTCGGGTAAATGCTATTCAAGCTGGCACTATTTGTACCGAAATGCACGCAAATAGTGGCGATCCGGATCGtgtagaaaaaattaaacataaaaTCCCTTTACATCGCGGTGGTGAAGCCATTGAAATTGCATATAGTGTTTTGTGGTTACTTTCTGCCGAAGCTTCTTATACCACGGGTACTTCAGTTAATATTAGTGGAGCCTATGAAGTTTTAAAGGATCCAGAAAAACGACAAGCTTACGATCAATTTGGACAAAATTGGAAACAGGGTCAGCAATTTAATCCCCCTCCGGGTTGGGATGCACAAGGTGCTTCAGGTTTTGCTGGCGGAGGATTTACCGGTGCAGACGCGGGCGATTTTAgtgatttctttgaaaatatgtttGGTGGTGGCGCTGGTTTTCGTCAAGGTGGCTTTAGCGGTGGTCGTTCGTTTAAAACAAGAGGTGAAGATTTGCATAGTAAAGTGACGGTGAATCTTGAAGATGCCTATCATGGCACTACTCGTAGTATTCGCTTACAAGTTCCCGAAGTGACTGCGCAAGGACATATCCAACATAAACTTAAAACTTTAAATGTTAAGATTCCTAAAGGTGTGACTGCTGGACAACAAATTCGTTTAAGTGGTCAAGGTGGGGCTGGACAAGGTGGTGGCAAAAATGGTGACTTATATTTGGAAGTCGAGTTTGCTAAACATCCGCATTTCACAGtagaagataaaaatatttatctacATCTGCCGTTAGCACCATGGGAAGCAGCACTTGGTGAAAAAGTCACGGTTCCTTTAATCAGTGGTAAAGTCGATTTGAAAATTCCTGCGGGTTCagaatcaggtaaaaaaatgCGGTTAAAGGGCAAAGGAATTCCTGCTAAAGTACCGGGtgatttttatgtgattttagaAATTGTAACCCCAAAAGCCGAAACAGCAGCGCAAAAAGATCTTTAtgcaaatatgcaaaaagaaTTTGCTAACTTTGCACCGCGTAAGGAGTTATCGTAA

Transcript

ENSSJYT00000015928

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q83F55	Chaperone protein ClpB OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) OX=227377 GN=clpB PE=3 SV=1
Q8P6A0	Chaperone protein ClpB OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=clpB PE=3 SV=1
Q9PGC1	Chaperone protein ClpB OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=clpB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013926 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07724 all species →	AAA_2	AAA domain (Cdc48 subfamily)	Domain	Interproscan
PF10431 all species →	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan
PF17871 all species →	AAA_lid_9	AAA lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan
PF01556 all species →	DnaJ_C	DnaJ C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR019489 all species →	Domain	Clp ATPase, C-terminal	Interproscan
IPR008971 all species →	Homologous_superfamily	HSP40/DnaJ peptide-binding	Interproscan
IPR018368 all species →	Conserved_site	ClpA/B, conserved site 1	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041546 all species →	Domain	ClpA/ClpB, AAA lid domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR001270 all species →	Family	ClpA/B family	Interproscan
IPR028299 all species →	Conserved_site	ClpA/B, conserved site 2	Interproscan
IPR050130 all species →	Family	ATP-dependent Clp protease/Chaperone ClpA/ClpB	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR017730 all species →	Family	Chaperonin ClpB	Interproscan
IPR004176 all species →	Domain	Clp, repeat (R) domain	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR002939 all species →	Domain	Chaperone DnaJ, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11638 all species →	ATP-DEPENDENT CLP PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034605 all species →	Biological Process	cellular response to heat	Interproscan
GO:0009408 all species →	Biological Process	response to heat	Interproscan
GO:0042026 all species →	Biological Process	protein refolding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000015226.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →