Genomic Location: not available for this species
NR annotation: KAJ7370500.1, DDB1- and CUL4-associated factor 13 [Desmophyllum pertusum]
Species Catostylus mosaicus · all data for this species · gene families
| CDS |
| ENSSJYT00000016024 |
| Transcript |
| ENSSJYT00000016024 |
| Protein |
| ENSSJYP00000015317.1 |
| UniProt accession | Description |
|---|---|
| Q803X4 | DDB1- and CUL4-associated factor 13 OS=Danio rerio OX=7955 GN=dcaf13 PE=2 SV=1 |
| Q6NVS5 | DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis OX=8364 GN=dcaf13 PE=2 SV=1 |
| Q7ZYQ6 | DDB1- and CUL4-associated factor 13 OS=Xenopus laevis OX=8355 GN=dcaf13 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006768 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04158 all species → | Sof1 | Sof1-like domain | Family | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR007287 all species → | Domain | Sof1-like protein | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR051733 all species → | Family | WD repeat-containing DCAF13/WDSOF1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22851 all species → | U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000462 all species → | Biological Process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11806 | DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13 | - | Ubiquitin system | ko04121 | deepkoala |
