Gene detail

Detailed information of ENSSJYP00000016031.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_002157969.2, uncharacterized protein LOC100208163 isoform X1 [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000016768

GTTTCTACGGCCTTTAGTTTTAGCACAGCACCGTAGCACTGGCTTGGCTTCTACCGTAGTAAACATCAGCGTCAAGCGAAGCTCATTTAGGGGTGATATTAAACTGGTTTGTTGCACAGGCGGCTGATAACGAACTACAAGCACAAAGATCCCGTCTTGGTAGAGAGCTCACGGAAAATAGTTTTATCGCCATCATCACACATCTGGGTTTTAGCTGATCGTAGAAGCGTCGTAACTATGGCATCCGATAATCAATCTGTTTCTAGCAACGAAAGCGGCAGCGAAGAATCGCCAGCCGAGgtaCGCACGCTGTTTGTTAGTGGACTTCCAATGGACGTCAAACCTCGCGAAATTTACCTGATGTTTCGAAGCTTTTCAGGATATCAAGGTTCGCTGCTAAAAGTAACTGGAAAAGagggaAAGAAAACATCGccAGTTGCATTTGTAACATTCGACACAAGATCACAAGGAGAATGTGCCAAAAATTCGCTACATGGGGTTCGATTCGATCCAGAAATACCAACGACGCTAAGGATAGAGTTTGCAAAAGCTAATACAAAAGTAACAAAACCGGCTGCATTGAAACCATTGGTATTGGGAAAACACATCATTGGACATGGGATACCATCACCGACAATGCAGTTTAGAGAACCATATGAGATGAATGCCATATTTCACCAAACACCAGACTCACCATGGGGACACCAACCTACACACTTATTTTCAATGGATATTAACGGAAACCCTACAACACATCTGCCATTCACACCTCCTGGAATGACTACGGCACATCATTCACCTTTGGAACGATTAACAACGCTAGGCCTCGCATTGCCTCAAGCACACCTACCTTCACCGGTCTCACCACATGCGCCTAACGCATATATTACAAATGCACTCGGCCAAGTCAATCATCATATCGATGTCAACCCACCTTGTACGACACTTTTCGTCGCGAATCTGAGCAATCGGGCGACCGAAGACGAACTCAAGTTGGTATTTGCCGGgaTGCCCGGTTTTCGACGGTTAAAAGTTCTGAGGAATAAAAATACCACACCTGTATCATTTGTCGAATTTATTGACGTCGTAACTGCGATGCAAGCTAGGCAATTATTAAATGGacATGTTCTCAGGTCGTCTGAGGCTGGCGGGATACGAatagaatttgcaaaaaataaaatggtaagcGAGaATTCGATGTTTAGCATTCAGTACATCTAACGAACTTTTATGATGGACAATCGCTGTATCCTCCTCCGCAGGGCATGGCAGTGTTGGTGCCTCGCAGAGAAATTATGACAGAAAGCTGAGCTTTTTGACCGCGGATATGTCACGTGACATGTAATTTATCGAATCTAATTTATTGGACGCCGCATTTGGGATTATTGACGTTAGTAccaatataattattattattattattattattattattatcattattattattattatcattattttatcattgttaaAGTTGTTGATAATGTTTTACAATTAAGTCTTTAATCTTAGTttctatttgaaattaaattaaattgctAACCAGAATTCATTGTGGCACCGAAATGGCCCAAGTTTGGACCGCTGAAACTAGTtgcttgatatttttgggtccaTGTTTTTGACTTGTGCCATTTCCTTCCCAGCCCCCATTATTGGGTGAATACATATACCAGGAAACCTTCAAGATACATCCGTCTGTATACCATGACGTAACCCTCCCATGATCCTTTGCAAGACCTTACTCACCAAAAATCTAGAACCTCGGACGAGAAAAGCAATGCATTATATCTTACGGCGACATTTCTGCTGAATATAAAAGCGTTGCTTTTCTAGCGTCATGGTCGCACGTTAGAGCCGGATCTCTATAAAAAGTTGAACAACGTAAAACTTTCCGCAGGAATCTAAGACATCTCGCAGTTACCCGAAACTTTAGATGTATCTAGCGCGTTTGCTTGTAACTCAGATGactttagtaaataatgtttgcTCGTTAGCAGTTTTGTAATAAATGCATATGTAGAGATTGATTACAAACGCGAGACTTCTCGCGGTGACCCATTATCACCCGTTTACCGATGCTTTCAATCTAGATTATTTTGGGATGGTGAAATTGATCGCTAATTATTAGCATTAGCAGTTTCATATTGATGTTCCAAATCGTTCCCTtttttaaagtgtttgatat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q93062	RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1
Q9WVB0	RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2
A0A8I6G705	RNA-binding protein with multiple splicing OS=Rattus norvegicus OX=10116 GN=Rbpms PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002509 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10501 all species →	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25091	RBPMS; RNA-binding protein with multiple splicing	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.