Gene detail

Detailed information of ENSSJYP00000016850.1 in Catostylus mosaicus

Genomic Location: chr11:8837639...8844822
NR annotation: XP_015769778.1, PREDICTED: m7GpppN-mRNA hydrolase-like [Acropora digitifera]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSJYT00000017611

CATTCTTCCAACAAACTTGGTTTTAAATGGTGGAAGCCTTCCCATGCAAAGTAAATATGGAAATCGTAGATGATGATATGGTGCAAAAAACAACACGCACGATGGGCATTTCGAAAGATATATTAGAAGATTTGTGCAGTCGATTTTTAATCAATATAccagaagaagaaagaaaggataTGGTTAGGATTTGTTTCCAAATTGAACTTGCTCATTGGTTTTATCTTGATTTTTATCGACAAGAAGATCCACAACTACCAGGATATGGAGTACAACAATTTATGGAAATTATATTCAATGAATTTCCATTCCTGAATAAAGAAGGTCGCAactttcaagaaatatttagCAACTGGAAGAAATACAAATGCGAAGTCCCAGTTTTTGGTGCAATAATGCTTGATGAATTGCTAGAAAATTGTATTTTAGTCAGAGGATACATCAAAAGAATAAGCTGGGGTTTTCCTAAAGGCAAAGTAAACAAAGATGAAGAGAGTGTAGATTGTGCAGTAAGGGAGgtGAAAGAAGAAACTGGATTTGATGTCACtaaattaattgatgaaaatgagtATTTGGAATGGGATTTTCATGGTCACAGGGTTCGTTTGTACATTGTCCCATTTGTGCCAtcatcatctatttttaaGCCAAGAACAAAAGGAGAAATAAAAGAGATTAAATGGTTTCCTATTGATGCCCTTCCTGCACATAAAAAGGACACAAATCCACGAGATCGACTTGGTTTAAATGCAAGCTCATTTTTCATGGTAATACCATTCATCAAAGATCTGCGGAAATGGGTGAGTCATAGGAAGCAAAATATGCTTGGTATTACTACAATGCAAAAATCGATTCCTGTGAAACAGAGCCAATATTCAGCGTTTACTCTTGTCGATAGtgcaaaagaagaagaagagagaCTATTAAGAAGAAAGCAAGAAGAACAGAAACGATTTCAAGAAATTCAACTAAGCAATCATCCATTATTAGATAATTTTccgaaaaatgaaaagatctTAAAAGATCTTCTTGGcttgaattcacagaaaacaaaatcgaaaaaaggaaatgaaaaggagaaaaaaagCGAGAGGCAACCTGAAGCCATTAGAAAATTGTTAAATGGGACCGTTGATTTTCCTCCAGaaaataaagtagagaatCAACCTAGTCGCGGATTTGGCTTACCACCAGGTTacttagaaaagaaaaagcaaactGAGACATTGAGTTCAAGAGATTCTCCAAAGAAGAAAGTAAGTGGTAAAAGTAATACCAGCAAAGGAATCATTGCTTTTCCCACAGAAGAATCTGCATCAATTAAATTCCCTGAAGGGGAAAATTGGGAGCAGGCGATAGAAGAGGGAAATGATGTGGAGAGTCAGTTTGGTCAAATATCGCATTTTACTTTGAAGAAGGAAACTTGTTTTAAGTCTTCAGTATTTCATGCAAGTTCAAATGAACATTTACCTTCAAGGGGTTGGTATGATAAATTACCCGAGAATGTTGGAATGCCAGAGAATCGAGTTAATTACAATGAAGaaacatttgcatttgatgtttttcaaacaaaatcgaaaattggaagcaaaacaTATGCAAAGAaaggaatgaaattttttgccaatCAAGATGAATCTTTTCGATTTGAAATTCCGGAATTTCtaactttcaaatttgatactaatgcATTGATTGCCACTCTCCCACctgaaacagtttttaaatGTAGCAATTAACTAATCCATTTGATGCAATTCTTTACAACATAGTAATACAAATGAACAAATCTAAGTTCCAAAACATCATAAAGATTTGCAGATTTAAAAACTGGAGAATTCCATCTGAATGACTGCTTTGGTCGTGTAgcttaaattttgattctgcATATTAACTATtaataatctttttaaaagacCAAAGAAACTGAATTAAAAGCTACAATCAAAAAGCTGTAGTAATTATGTATAAtagtttaaaattgatttttttattaatttcatgttaaGAGTTTATTAAGTCTCTGTTGCAAATATTTGTTAGAAAGATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IU60	m7GpppN-mRNA hydrolase OS=Homo sapiens OX=9606 GN=DCP2 PE=1 SV=3
Q5REQ8	m7GpppN-mRNA hydrolase OS=Pongo abelii OX=9601 GN=DCP2 PE=2 SV=1
Q9CYC6	m7GpppN-mRNA hydrolase OS=Mus musculus OX=10090 GN=Dcp2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006965 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05026 all species →	DCP2	Dcp2, box A domain	Domain	Interproscan
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007722 all species →	Domain	mRNA decapping protein 2, Box A domain	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR036189 all species →	Homologous_superfamily	mRNA decapping protein 2, Box A domain superfamily	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR020084 all species →	Conserved_site	NUDIX hydrolase, conserved site	Interproscan
IPR044099 all species →	Domain	mRNA decapping enzyme 2 , NUDIX hydrolase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23114 all species →	M7GPPPN-MRNA HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0140933 all species →	Molecular Function	5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0050072 all species →	Molecular Function	obsolete m7G(5')pppN diphosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12613	DCP2; mRNA-decapping enzyme subunit 2	EC:3.6.1.62	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →