Gene detail

Detailed information of ENSSJYP00000017793.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_047129982.1, lysine-specific demethylase 6A isoform X1 [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

ENSSJYT00000018621

atgttttttttatcttccCTTAGTCGTCTTTTTGGATTCATGAGATGGTTTGAGCCAATTTGTGAAGGGGCTCAAAGTATCAACCACGGTTCATTATTAAAGAAGGGAATTCAGTTCTTggaaaataaacttaaaacaGAAGGAAAGCAAGCAGATCCAagaatttattgccaattaGGCCATTTCCACCTCCTTTtagaagattttaaaaaagCTATGTCTGCATATCAACGTTTTTTCAACCTTCATGAAGAGTATTTCAAGGACGCACCTTTTTTGTATGGTTTAGGaatagtttattttcattttaacgcATACCAGTGGGCAATTAAAGCTTTTCAACAATTATTGTATATTGACCCAAGTTTTAACAGAGCAAACGAGGTTCACCTTAGACTTGGTCTTATGTTCAAATCTATGGCAAATTATGATGCTAGTTTGAAGCATTTCCAGCTCGCTTTATTAGATTCGAATCCGTGCTCATTATCAAAAGTTGAAAttCAATTCCATATCGCACATTTGTTCGAAATGCAGTCAAAGTTTGACTTAGCAAAGGAGGCATACCAAGCCATAATCAGTGCTAATGGCATGCCTCAGCATATACAATCAGTGGCATGGAGACAATTAGGTTGGATGTATCATTCGCATGAACAGTTAGGTGATAAAAGCCAAAGAACTCAAGAAGCGGTACATTGCCTTCAAAAATCTCTAGAACTCGACCCATCGAGTGGCTCATCTTGGTACTTCCTCGGACGgtGTTACTCACAACTTGGAAGGGTTCACGATGCTTTCACGGCATATAGACATGCCATTGACAAAGCAGAAGCTAATGCAGACACTTGGTGCTCTATTGGAGTACTGTATCAGCAACAGAATCAACCCATGGATGCATTGCAAGCTTACATTTATTTGTTTCTTTGCATTGGGATTTTCCTCAGCTCTGTAACAAGGCATATTTGTGTCAGTAAGAACTCATGTACTCTGCCAAATATTGAAGAAGCTTGGAAGCTTCCAATCCCAGCTGAACTGACAACAAGAACTGTTAGACTTGTGCAACAGGCACGGTTAAATCAGCAAGCAGCACTACAGATACAAGGACAAAACGCGACTCAGCTCCCAGATGCGAAACAAACACAGGTTATTGTCCAGTCAGATGACAGCCAAAAGCCCAACCAGTCACAAAATAACCATCCTACTTCAATCCATCCGGTGTCATCAttacaacaacagcaacaacagcagcagcagcagcaagATGGCAATGGACTTGCACACAGTCAAGGAATGCGTTTGAGTGTTAATGGGCCATTGCCACAGAACAGTTTGCCAAAACAAAGTCAGCTGGCAAGCATTGAGCCTGGCCTAAATGACTCTTGGAACAGACCATCACAAAACCAGTTGATGCACCAAGGTAGCAATCCAAATATGACAGGCCATCAAGCAAGATTTGGAGCCGAGCAGACGTTAAACGTTGTCAATGGTCTCAGTAGCGTCTCAGAATTCAGTTCTCATCAACCAGTTTCATCAATGGCATCACCTCTATTGTCTCCAAAAGCAGCCCAGCTGAATGGTACCCATCCGAATTACAGCCAACCTTTGTCAATTTCAAACCCACCAAATTCACTTTTATCACCTGGTATCGCATCGCCTCATCTTTTATCCCCCCACCAACCACTCCTGTCACCAAACACTCCAAAAATGGGAGCTAATACAAATGGTATCAAAGTGCCAAAGTTGTCTTTGCTCTACGATCCAAAAGAAGTACCAAGGGCACCAATTCCACCGCATCCCAAATTGCCGCTTGAAAAGCTGAATCCACCAACACCCAGCATAACGGTTGAATCCAAAAAGGATGCAATGTCTGTTGCATTAAAAAGGTTTTGTATGGACCCCAGAAACCCAGTTACTGTCATCCGAGGAATTTGTGAAGCCTTGAAAATAGACCTGGCCATGTTCGCTACAAAGAAGCTGGTGGAGCACCAGCCAGATTTCACTGTAGAAATTAGGCATCAGcGTCAACAGTCTCCTGATGAAAATTGGGACGCTGAAGGAACCAAACAGGTCTGGTACTGTGAAAGCAGCAGGTGCGAATCTTTTTATacttacaataaaataaatgcttgttttttgAAGTCTAAGAAATTCAACATGATAAAGTTTGGAACAAACGTAGACCTATCGGATACAAAGAAgTGGAAACCACAGGTTGCAGAGCTCACAAAACTTCCACCATTTATGAGGGTTGTTAATGGTGGCAATATGCTTAGCCACATAGGACACAATGTTTTAGGAATGAATACTGTGCAACTTTACATGAAGATTCCTGGTTGTAGGACGCCAGGTCATCaggaaaacaataatttctgTGCCTTAAACATCAACATTGGTCCAGGAGACTGTGAATGGTTTTGTACTCCTAAGGAATATTGGGGTGTTATTCATAGCCTGTGTGAAAAGCACAATCTTAATTTTCTTGTCGGCTCTTGGTGGCCAAAACTAGAAGAATTATACGAAGAGCGAGTTCCTGTTTATCGCTTTATTCAAAAGCCTGGTGAACTTGTATGGCTAAACGGTGGGAACGTGCATTGGGTGCAATCTGTGgGCTGGTGCAACAATATTGCTTGGAACGTAGGCCCTCTAACAGGTAACCGATTATCTTTGATTATTTCAGCTGTCAAGTCGATCGTACCAATGCTGAATCTAACTTGGAATCTTGCTCGAAATGTCAAACTTAGTGAGCCGAATTTGGTAGATCATTTAAAGAAGCTGTTAGATAGATCTTTGAAATACTGTGAGATCACTATTGATCTTTTGAGACAAGCTGGTATCGAAATAGTTTTTCatggcaaagaaaaaaatgaagctGCACACTATTGCTCAACGTGTGAGGTCGaagttttcaatttgcttttcgtaaaagaaatcaacaaaaaattaatggtACATTGTCAAGATTGTGCAAGGAAAACCAGCGCTGCTTTAGATGGATTCAAAGTTTTAAATCAAGTAAGTATGATGGAAATATACCAAAATTTCTGTGTCAATTCAATGCCAAATCAACTTCAAACATTACCATCAAATATGCAAAATGCAAGCATAAACACCATGAATAGTCATCTAAACAATGTAAGTTTCAATTTCCATCGAGTCCGTTTTTTCCTCGTACGTCTAATTACatga

Transcript

ENSSJYT00000018621

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70546	Lysine-specific demethylase 6A OS=Mus musculus OX=10090 GN=Kdm6a PE=1 SV=2
O15550	Lysine-specific demethylase 6A OS=Homo sapiens OX=9606 GN=KDM6A PE=1 SV=2
P79457	Histone demethylase UTY OS=Mus musculus OX=10090 GN=Uty PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003601 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21322 all species →	KDM6_C-hel	Lysine-specific demethylase 6/UTY, C-terminal helical domain	Domain	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF21326 all species →	KDM6_GATAL	KDM6, GATA-like	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR048562 all species →	Domain	Lysine-specific demethylase 6A/B-like, C-terminal helical domain	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051630 all species →	Family	Transcriptional Corepressor and Histone Demethylase	Interproscan
IPR048560 all species →	Domain	Lysine-specific demethylase 6A/B-like, GATA-like	Interproscan
IPR046941 all species →	Homologous_superfamily	Lysine-specific demethylase 6, GATA-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14017 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0044666 all species →	Cellular Component	MLL3/4 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000017793.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.