Gene detail

Detailed information of ENSSJYP00000018093.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_047126873.1, protein PAT1 homolog 1 [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

ENSSJYT00000018935

ATGTCTGATACTTTTTTTGGTTTCGACACATCTCTTCCTGCATTTGAAGGTGATAATTTGCTGGATGAAAAATTGGTGGTGACTGAAgaagtaaatgaaaatgaagtggatgataaaaatgagGAAACATTTGGAGGGGCAGCCGATGTTGAAAGTGCTCTGCCAGCAATGGCTGACGGATGGCAGAAAGGAAAAGGGATGTCCATCAAAGACATTTTAACACAAGAATATCAGAAGTCGAATGAGGTTGTCAGTTTTGAAGAGGAAATGGAAGAGGAGGAGATTATCGAAAACAGCATTTCACAGCTAGGTTtggatgatgatgttgatgaaaaagaaaccaTGTCAAAACCTGTAGTTGATGATAATACCAGTTGGAATGTGCCAGCTCCAGGAACACCTCAGAGAGGCTCCTTAAATAAGGATAACATATTGCAAGACATTCTCTCTCCTGACATCCGAGGAATTTGGACGTCACCAGATCGCAGTGAAGCATCAAGTGGAGCATCGCCACAGCGTAGCAGTGAAGAAAAACAGCCTGATTTATTGAAGCAGATTTTCCACTCAGCAAATCGCAGTGTGTCAAACGGTGACCAGAGAAATAGGATTGCAAATGTCATCAAAGCTGAGGATCTTGAGAAAGGCATTCCTTCAGATGAAACACCTTCTAAAGATCATTCAACACCAGTTATAATCGAAAGaAGGATTCCAAGAACTCCAGTTGCTCCCCCGGGATTTCCATTTCCCATAGGAACTCCCCCCTCTGGAATACCATGGATTCAACCGCCAGGAATGaTGCCATTTTCTCCAATGATGATCAATGCTCAAATGCAGAGGATGCTGGCTGCATCGCCATATATGGGAATTCTCGGCGACATGCCGAATCCAATGAGATTTCCGCGAGGAATGCCGCCAGATATGAGGCAAAGAATGCAAGGCACACCAAACCAGCGAGGAAGATACCAAAGGTGGGGACATGGGAACACTCGTTTCCAAGGATACCAACAAAGGAGGCAATGGCATGGTAACGAGCAACGCCATAATTACCATGGTAACCAGCAGAGAAGGGAGTGGAGCAACTACCCATCTCatgatgatgacgtcatgAAACTCCCGCCTTCAGAATTGATGACGTCAAAAGAGAAAGAGTGGCTGGTGAAAATTCAGTTAATGACGCTGTTGACAGATGATCCACAAAATAAAGactattattattttAATTATATGGATAAAAAAGCTACGAAAATGGAAAcagaaaaaagtgaaaatgaaaaagccaaAAGTGAGACGGACAAAGAGAATTTTAATAAACTGCTTGATATCGTTGAGCAAAAAAGGGAAGAGAGAAAATATAGACCAGctgcatttgaaGGCTCGTTAGGAAAACCGACATTGGCAAACGTGCATCATCCGCGCAAATTGGTAGATGTATCCTCCAAAGAACAGGAAGACGAAGACCCTGCGAAATCAAAAACAACAGATGGGATGAAAAAGAGATTCAATATATATGGTAACattgaaaaaGCATTCGCACTTTTGTTGGACATCGAGGAAATAAACAGAAAGTTATTAGATGTCCCGGATCTGGAAAGtgatgGTCTTCTTCCAGAACGAGGCTCAAAAATCGAGGCCCTTTTTCATGCAATGAAGCTATCTTTGGATAACTGGCAAAAgGACAAAGTCAATGATATGTTTGTCCATATAATGTGCATTCCAAAAGGAAAAAGACTTTTTCTCAGAGCGCTTCAATACTTCAACAAGGAACAACTCCAATGCGCCTTCCTATCGATTCTAAGCAACCTGCAAATCATTATCAAGAAAGATGCTCAAGAGAAGgCCTTGTTGCCCTTGATCGAACTCATCAGAACAGCATTACAAGATGGCGATGAAGTATTTGTTCGTCAAACTCTTACTGCATtaactgcaaataaattgtcacAACTGTTTTTATATTCAtttggTCTAGATATTGTGGCTAGTTTTCTGGAGGTTATTGATacttattcaaaaattaacaaatatttagaaaataaagaatttcaagAATCCAGCGAAGTCTTAAGGAAAGAAGTTGTTGCATCGTTGActcaaatttcagccaaaagtcgAGAAAGGCATTCTAAGGAAATCAGTCGAATTGAGAACCTTTTACAGAAGCCGGAATTAACACATGCTCCCGAAGAGTAA

Transcript

ENSSJYT00000018935

CTTTTCGGAGAATGGCGAGTAGTGGCCTAAATGACATCCAAAggcatttcataaatttttgcgaaaattgaCCATTTGCAAGATGTCTGATACTTTTTTTGGTTTCGACACATCTCTTCCTGCATTTGAAGGTGATAATTTGCTGGATGAAAAATTGGTGGTGACTGAAgaagtaaatgaaaatgaagtggatgataaaaatgagGAAACATTTGGAGGGGCAGCCGATGTTGAAAGTGCTCTGCCAGCAATGGCTGACGGATGGCAGAAAGGAAAAGGGATGTCCATCAAAGACATTTTAACACAAGAATATCAGAAGTCGAATGAGGTTGTCAGTTTTGAAGAGGAAATGGAAGAGGAGGAGATTATCGAAAACAGCATTTCACAGCTAGGTTtggatgatgatgttgatgaaaaagaaaccaTGTCAAAACCTGTAGTTGATGATAATACCAGTTGGAATGTGCCAGCTCCAGGAACACCTCAGAGAGGCTCCTTAAATAAGGATAACATATTGCAAGACATTCTCTCTCCTGACATCCGAGGAATTTGGACGTCACCAGATCGCAGTGAAGCATCAAGTGGAGCATCGCCACAGCGTAGCAGTGAAGAAAAACAGCCTGATTTATTGAAGCAGATTTTCCACTCAGCAAATCGCAGTGTGTCAAACGGTGACCAGAGAAATAGGATTGCAAATGTCATCAAAGCTGAGGATCTTGAGAAAGGCATTCCTTCAGATGAAACACCTTCTAAAGATCATTCAACACCAGTTATAATCGAAAGaAGGATTCCAAGAACTCCAGTTGCTCCCCCGGGATTTCCATTTCCCATAGGAACTCCCCCCTCTGGAATACCATGGATTCAACCGCCAGGAATGaTGCCATTTTCTCCAATGATGATCAATGCTCAAATGCAGAGGATGCTGGCTGCATCGCCATATATGGGAATTCTCGGCGACATGCCGAATCCAATGAGATTTCCGCGAGGAATGCCGCCAGATATGAGGCAAAGAATGCAAGGCACACCAAACCAGCGAGGAAGATACCAAAGGTGGGGACATGGGAACACTCGTTTCCAAGGATACCAACAAAGGAGGCAATGGCATGGTAACGAGCAACGCCATAATTACCATGGTAACCAGCAGAGAAGGGAGTGGAGCAACTACCCATCTCatgatgatgacgtcatgAAACTCCCGCCTTCAGAATTGATGACGTCAAAAGAGAAAGAGTGGCTGGTGAAAATTCAGTTAATGACGCTGTTGACAGATGATCCACAAAATAAAGactattattattttAATTATATGGATAAAAAAGCTACGAAAATGGAAAcagaaaaaagtgaaaatgaaaaagccaaAAGTGAGACGGACAAAGAGAATTTTAATAAACTGCTTGATATCGTTGAGCAAAAAAGGGAAGAGAGAAAATATAGACCAGctgcatttgaaGGCTCGTTAGGAAAACCGACATTGGCAAACGTGCATCATCCGCGCAAATTGGTAGATGTATCCTCCAAAGAACAGGAAGACGAAGACCCTGCGAAATCAAAAACAACAGATGGGATGAAAAAGAGATTCAATATATATGGTAACattgaaaaaGCATTCGCACTTTTGTTGGACATCGAGGAAATAAACAGAAAGTTATTAGATGTCCCGGATCTGGAAAGtgatgGTCTTCTTCCAGAACGAGGCTCAAAAATCGAGGCCCTTTTTCATGCAATGAAGCTATCTTTGGATAACTGGCAAAAgGACAAAGTCAATGATATGTTTGTCCATATAATGTGCATTCCAAAAGGAAAAAGACTTTTTCTCAGAGCGCTTCAATACTTCAACAAGGAACAACTCCAATGCGCCTTCCTATCGATTCTAAGCAACCTGCAAATCATTATCAAGAAAGATGCTCAAGAGAAGgCCTTGTTGCCCTTGATCGAACTCATCAGAACAGCATTACAAGATGGCGATGAAGTATTTGTTCGTCAAACTCTTACTGCATtaactgcaaataaattgtcacAACTGTTTTTATATTCAtttggTCTAGATATTGTGGCTAGTTTTCTGGAGGTTATTGATacttattcaaaaattaacaaatatttagaaaataaagaatttcaagAATCCAGCGAAGTCTTAAGGAAAGAAGTTGTTGCATCGTTGActcaaatttcagccaaaagtcgAGAAAGGCATTCTAAGGAAATCAGTCGAATTGAGAACCTTTTACAGAAGCCGGAATTAACACATGCTCCCGAAGAGTAAAATAAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V7K4	Protein PAT1 homolog 2 OS=Xenopus laevis OX=8355 GN=patl2 PE=1 SV=1
B5DEB9	Protein PAT1 homolog 2 OS=Xenopus tropicalis OX=8364 GN=patl2 PE=2 SV=1
A2ARM1	Protein PAT1 homolog 2 OS=Mus musculus OX=10090 GN=Patl2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09770 all species →	PAT1	Topoisomerase II-associated protein PAT1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019167 all species →	Domain	mRNA decay factor PAT1 domain	Interproscan
IPR039900 all species →	Family	Pat1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21551 all species →	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12617	PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.