Gene detail

Detailed information of ENSSJYP00000018103.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_031553463.1, DNA topoisomerase 2-binding protein 1-like [Actinia tenebrosa]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

ENSSJYT00000018950

ATGGCGCGGTGTTTAAGATTCATCGTAACAGGCGACAACAACGATGAGGAAGcaattaatttcttaaaacaaGCTGCCAAAGAAGCAATAGATGCTGAAATTGATGTAGACTGGTTCTCTTTTGAAGATATTGAGCGGGACTCAGATAAAATTGGAAACGAAGCCGTGATAGTTTGTGAAACTTTTGAAGGAAATGCATTTGAGAGTCTGAAAAGCCAGAAACAAAGAATTGTTGGACCAGCTTGCATAGTTCATTGCCTTAGGAATGTTGAGCCTTTGCCGTCAGTGGCACATCCTGTTCTGTCTCTTGCAATGTCGGATGTGGTTGCTTGCTGTACGAATATTTCCATCGAGCAGagatcaaaattaaatgacCTTATTGTAGCGATGGGTGGGATAATGATTGGAGATTTCACTCAAAGTGTTACTCATTTGATAGCAGGTGAAGTTGGATCCAAAAAGTATAAAGTTGCTTGTGGTATTGGCATTCCTATAATGCAGCAATCGTGGGTATCCGATTGCTGGAGTCAGAGCAGATATAAGGTTATAGCAGCGCTGGATAAAACTGTACAGAAAAATTTATGTCCTTGTTTTAAAGGGCTAACAATTTGTGTCACTGGTCTAGATGCATCCATAAGACACGAGGTTAAAAAATTGACTGAAAAGAATGGTGGAAAATATTCTGGGGAGCTAAACATGAGGACTTGCACCCATCTTATCGTTAAATTTGCGAAAGGGGAAAAGTATAATTATGCAAGACAATGGAAGATTCACTGTGTATCGTCAGAATGGTTTTATGATTGTGTAAAAGAAGGCCACTGGGTTGATGAGAGCAGCTATGAAATCACCCCAGGAGAATCTTCTAGAATGGATGACTCTAAAATCTTAGATATTGGAAGAAGCAGGGTGAACATGACGATTCAGAGTGATTTAGATTGTTCTGTGGTTTCAACCAAAGCTGCAAAAATGGCCGAAAAGAGTATGAAAAGTAGAGAAACTGCTAAAAGCATAGAAGATAGAGCtgatgttaatgataatgatgtaaAGAAAAAGTCCACAATTAGAATCAGAACTTTTGATACTTGTAATCTGAAATTAACAGATATTaagatgaaatcaaatatgCTGTTGGATGgttgtaaaatttatttatcagAAATGCCACAAGATTTAACTGACCAATTTAGAAAATTGATTAACACAGCTGGTGCTATGAGATTCAATtcattgaattcaaatgtaaCACATATTATTGTTGGTGATGTCGTTTCCAACAGTATTCAAGAATATTTAGAGGAAAACTTGCAAAAGCCACACATAGTGTCTCCAGATTGGTTAATAGATTCGTGCAAAATGGGTCAAGTTATGAAAGAAGAAGCCTACTCCTTGCTTGAGGAAGATAGAAGTGATGAAATCATGGCCAAGCCATCAATGATACCCCCCAAACGAGAAATGAAGAATTTGggaaacattgaaaagaagaaggaTCCACGTCACGCTCCGTCATTTCatcttgatgatgattttgaagatGATGTCTTCTTTGGGCAGTATTTGCCCCAAGCTGAAAGCAGCAGAATATCATTTGTGGCTGAAAATAAAGTTCCTGTTCTTGAAGAACgcaaagaaaagcaaaggaTAAGTGATGAATTGCACAGCCCTGATTCTGCAGAGGGTATGTTGTTAAACGTTAAATGGTTCGATTCTTCCATGACTGTTACTGGCAAAACATTCCAACAGTGTAAATTTGTCGTCAAGTTCTTTGAAGAAGAAACAGCGGAGCAGGTCAAATCTCTTGTTCAAGAATTCAAAGCGAAAATTGTCAATCAAGAAGCAAGGGCTGATTATGTGATAGTGCCACTAGCTTAtgagaagaagagaagaattGGCAAGAAGGAGGTGACTATTTGCTGGTTAGAACAATCCTTAGAAGCTGAAAATCTTCTTGACAAGAATTCCTGCTTTATATTTCGTCCATTTCATCTTCCGCCTGACTGTCTACCATTGAAAGATTTTGTAATGACAGTGAGCCAATTCAGCGGAATACAAAGAGAGCATATCATTCAACTAGCAGACTTGTTAGGTGCCCTGATGCAAGATAATTTCGTACGCAAGGCAACCAATGACCTTCTTGCCAACACGCATCTTATGCTAGCAGAGGCATCGGGTGCTAAATATGAAGCTGCATGCAAATGGGGTGTCACGTGCGTCTCAAAGGAATGGTTGTTTGCATGTGCAGAGCAGAAGAAGCTGATGCCAGTGGAAGATTTCCCTCTTAAGAAGGAAGAGATGGAAGAAGATGGAgaggaagaagatgatgaagagcAAGAAGAAGAGCAGAAGAATAAAATAGGGATGAAGACGGAAGATGCAGAAGAATTGAGAGGTAATATCAGCAGAGATGATGCTATTGACTATAGTGCGAAAGAAGTTgaagataatgaagatgaagacAAAGCTGGTTACGGCACGGAAGATGAAAGTAGAATAGGACCCAATCATGGATTAACTGTAGCTGAATCTTCTTCAAACAGACGTCCTGCACTTGGCAATGCTACTAAAGATCTTCACGAACAGGAAGATGATCCTCCGCCGAATTTCGAAGATGTGAATCCTGCTTCGAAACCACTTCTTACACCTGCAAACAAGGCCAGGCCTCTTCTTCAGCGTGGAAAGCCGTTTAGGCCATCTTTCGACCTCAATGACATGATGGAGTACCTCAAATCGCCAGCTTCATGCTTCACTCCAAGAACAAAAAGCCGGGCTAGCAGAGGAAGTTTTGCTTTTGATGAGTTTGTCGGGAACCAGCTTCATGTTGCCGTCAATAAGGAAAACAACGAAACAAAGatagaagaagatgatgaaaataaaaaggagaATGTGATGAATGGTATTTTAAAAGGTGTTGTTATTGCAGTTAGTAAGAGGCTTAGCAATCGACAAACAGAACTTCACAATCTTGCATCGTTATTAGGTGCTGATTATCGCTATGTATATGACGAATCATGCACGCATCTTATTCATAAGGGGAAGGTGACTGACAATCTGACGGAAGTGAAGCAGGCGCGATCGCAAGAGAAGTTGATAGTTTCAGAGCATTGGCTCGAAGCGTGTTTGGAAAGTAATTCAAAGGTTCAAGAAGACTTCTACCCATCTACCTTTAACCCAAAAATGTCTTTGTCTGTCGTCTCCAAAGGAAAAAAATCAACGCGTGCTTCgATATCAGAAGACGATTCAAGCCGGCGACAATCAATAAAACCTGGCAACAAAGATGGAGAGACTTCGAAAGGGGGTACTTCAAGGAGCATTGTCTCGCCCCCTGCTTTTGAAAATACGTCATCATTAGACGCAAGATTGGAGTTTAAGAGACAAATTGAGGAAATTATGGAAGCAACAAAGGTagaagaaataatgaaaaattACTGTAAACCACAACTTACAAACTTTGGAAGGCAATTCACCATATTGATAACaacaacttgtttttcttttcagagAAGCAATAGCGAATCATCAAGATCTTCAAGCGAAAAGAAACAGAGTTCCAAGGTTTCCTGCTTTCCGACTTTGCAGCCATCCCAAGGTGACGTCATAACCTATGATGATCCTGCTGGGCGTTTAGAGAGGGAACGAATTTTAGCGCAACTTAAAGCTGCAAGTCCAAGCCAAGATGGCTTCACAGAATTTCGATCTACGGAATTGTCGGATTTTCCTGTCGAGGAAATGGAGGAAGAAGACCCTGCTGAGACAGTTCGAACTAGAGAGGGCAGTTCGAAAACTAAAGGAGATACGCCAGTAAATCTTCTGGAAGATGATGACACAGAAGAAAACGTAGAAGCAGAACATGCTGTATATAAGTTCATCCTCTCAGCCATGACACCACAAGAGAAGATTCATTACTCTGCAATGATTGAAGAGCTAGGTGGAACTATTTGTGATTCACAGTATTTTACGTTAGAGTGTACTCATGTCATCGTTGGGGCGCCGAACAGaaaCGAGAAGTTCTTAGCATCAGTAGCTGCTGGCAAATGGGTGCTGCATAAATCATACTTAGAAGCAAGTCGAGAAGCAGGAGTTTTTGTCTCTGAGGAAAGCCACGAATGGGGAACAGAAGCAGAACCTACAAAATTAACAATCGCTGTACGAAGATGGAGGCAAAAGCTTAGCGAAGACAGAAAGttgGATGCATCTGCTGGCGCATTTAAGAGTTGGCACGTGTTGTTGTGTGTTGGTTCGTCGGTTAAACAACATGGCTTCAAAAGAATGTTAGAAGCTGGAAGCGGGACAGTTGCTTGTACCCACCCACCgtttaataattttgaaaatgtcacTCATGCATTCATTGCAAAGCCTAGACTAATAGATTATTACAATCAGTTATATTCAGCTGGGATATGGGTGCTTCGTCCGGATTACATTGTTGATTATTTGACAACTGATCCTCCTCCACCAACGCTCAAATACGTCATTCCGGAAATTCAAAAACTGATGGAAAGCGAAGCAAAGCTGAATAACACAAGTGactcaaagaaaagaaagaatgcaGAGGAAACGTCCTCCCAAAAAATGAAGCGGACAAGAAAATGA

Transcript

ENSSJYT00000018950

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q800K6	DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis OX=8355 GN=topbp1-A PE=1 SV=2
Q7ZZY3	DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis OX=8355 GN=topbp1-B PE=2 SV=1
Q92547	DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004195 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21243 all species →	ECT2_BRCT0	ECT2, BRCT0 domain	Domain	Interproscan
PF12738 all species →	PTCB-BRCT	twin BRCT domain	Family	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR049396 all species →	Domain	ECT2, BRCT0 domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR049936 all species →	Domain	DNA topoisomerase 2-binding protein 1, eighth BRCT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13561 all species →	DNA REPLICATION REGULATOR DPB11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10728	TOPBP1; topoisomerase (DNA) II binding protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.