Gene detail

Detailed information of ENSSJYP00000018446.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: EDO39967.1, predicted protein [Nematostella vectensis]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

ENSSJYT00000019302

GCAGGCgatgaaaataattgcttGAGTGCACACAAGAAAAGAAAGGCCGGACCCAAAGCAGATAAGAAAGCAAAAGGCAAAAGTAATGCTGGAAGAAACCCAAAAGCATTTGGCTTCCAATCTGTGCAAAAAGCAGCCAAAACCTTTCATAGGAAACAAGATCTTGAGACAAAAAAGCAGCATGCCCCGGTAGTTGACAGAACGCCTGTTGAACCTCCACCAATAATCGTGGCAATAGTTGGTCCGCCGAAAGTTGGGAAAACGACACTCATAAGCTCATTGATAAAGAATTTCACAAGGCAGAAGATTTCAGATATCAGAGGACCAATTACTATTGTATCAGGGAAGAAGCAGAGGATAACATTAATTGAATGCAATAATGACATAAACTCAATGattgatattgcaaaaatagcaGATTTGgtTCTTTTGCTCATTGATGCAAGTTTTGGatttgaaatggaaatatttgaattcCTTAATGTTGCACAAGTTCATGGCTTCCCAAAAATAATGGGTGTCCTGACACATCTTGACCtcatgaaaaataacaaatcattaaaaaagataaagaaaaagatgaagcaTCGATTCTGGACAGAAGTTTATCAAGGTGCAAAGTTGTTCTACCTTTCTGGTATCCAACATGGGAGCTACTCAAAAACTGAAATACATAACCTTGGCAGATTTATCTCTGTTATGAAGTTTAGGCCACTGACATGGAGAACTCGCCATCCATACATTCTTGCTGACAGGTTTGAAGATCTGAGTGATCCAGAAAAAATAAGACAGAATCCCAAAACAGACAGGACAGTTTGTTTGTATGGATACATGAGAGGAGCCCATTTAAGATATGAGTCAAAAGTTCACATCATGGGATGTGGTGATCATTGCTTGAAAGACATAAGCTTTCTTCCTGATCCATGTCCATTGCCAGAAAGAGAGAAAAGGCGctctttaaatgaaaaagaaaggcttGTATATGCGCCTATGGCAGGAGTTGGTGGCATTGTTTATGACAAGGTAAACATTACATGCTTTGATAGAAAATTTCCAGTCCCCATGATCACAGGTCCACTTGTCATTATGTATAACCACAGGAAGTTTCTGATTAAACATAATAACTCTATTCATATAAGAAACAAAAAacttattcaatttatttcaattcatagCGATTCGAAATGGACTCTGCCAAATGAAGAATTAGTTGAAGATGAAGATCAAAGAATCAGACGTAGAGTTGTTTTCGATGAAGATAATGCTGGTGATGGCAATGAGAGCGAGGAAGAAGATTCAGGgcttgatgaagaagatgaatctgaaaatgaagatgatatgGATAATGAAAGCAGTGATGACGACGAACCATCGAATAAACGAAGTCGTAAGGTATCAGCCAGTGTTATCAATATAGACcttgtcattatcatcgttTTTCCTATTATAGACCTGTCTTTATCCTTTCATCCCCGGTGGAACCATTTGGCCCTTAAATCTTCATCGAGAATTAATGCTGGCAAAGAatcagatgatgataattctggaaatgatgatgatggcaaaGACATGCTTGGTGGGTTGTTTGCGGTCAGATCTCAGAAGGAAGAGCGTGAGAGGATGAACAGATcgattttgcatcaaaaagacTGCTCCCGAGACCTTGCACAAATGTCCTACTCATCTGAAGATGATATGCAAATGTTATATGAATCAATTAAAGACTGTTTTGTTACTGGAAAATGGAATGACTCGCACGCTGctcttgatgatgatgatGAAGAATTATTTGGTGACTTTGAAGATCTTGAAGTCGATGAATCCGCACTTGAAACTAAGGAAGATCAGGAAAAcagtggtgatgatgatgaaggagCGGAAAGTGATGAAGGAGATGACGAAGAAAAAAGATTGGccaagaagaagaaattaaaagaagcCTTCAATTCTgaatatcttttcattttcaaaCTCAATCAACAAGAATTCCAAGACATGGAGGACGAGCTTCGTGTCCAATACGAGGGTTTCCGGCCTGGTATGTATGTCCGCGTGGAGATTCAAGGAATGCCCTGGGAATTTGTAAACAACTTTGAACCATCGTATCCTGTTGTACTTGGTGGCCTTTTGTCTGGAGAAGATGACATCGGTTTCTTGCAGGTTCGCTTCAAAAAGCATCGATGGCATgacaaaattcttaaaaatcgTGATCCTATCATTGTCTCCCTTGGATGGCGAAGATTTCAGACTGTACCTTTATACTCAGTTCAAGACCACAATGGAAGGCATCGGGCACTGAAGTATACGCCAGAACATCTCCACTGTGTAGCTACGTTTTATGGACCTCTCACACAGCCAAATACTGGTTTATTAGCAGTGAAATCTGTTTCTGAAGTTACGTCTAAATTTCGCATCTGTGGGACCGGTGTTGTTATTGACCAGGACAAGTCAGTCCAAGTtgtaaagaaattgaaattggtTGGAACTCCGtggaaaatattcaaaaatacagCATTTATAAAGggAATGTTTAATTCTGCCCTCGAAGTAGCAAAGTTTGAAGGAGCTGCTGTTAGGACAGTGAGTGGCATAAGAGGACAAATCAAAAAAGCAGTAAAGaccGTCGAGGGAGGCTTCCGTGCGACATTTGAAGACAAAATTCTAATGAGTGACATTGTGTTTTGTCGAACATGGTACCCAGTGACGTGTCCTAAGTATTACAACCCCGTTTCATCATTGTTGCtaagcaaagaaaacaaaaacagttgGACAGGCATGCGTACTGTTGGAGAAATGAGAAAAGCTATGGGAATTAAGGCAGAATATAATAAAGATTCAATCTATCAGCCAGTTGAACGAAAAAATAGAAAGTTCAATCCTCTTAACATCCCAGCAAAActgcagaaagatttgccgtTCAAATCGAAACCAAAACTAACGAAAAAACAAACGCAGAAAAGTTTGGAGCACCGCAGAGCTGTTGTTATGGAACCAGATGAAAGAAAGGTGCATACGTTGATGAGAGAGCTATCGAcaataagaaatgaaaaacaaaggaaGCAGAGGGAAACCCTAGAAgcgaagaaaaaagaattcaaaaagaaaCTTATGAAAGAGAATGCTAAAAGAGACAGGAAAATAAAGGAACAGAAGAAAAGAATATATAAAATCTTAGGACAAGAAGAGAAACGTAGACAAAAAGCAGCTGCCAAATCAAAACGTTCTTAA

Transcript

ENSSJYT00000019302

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14692	Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens OX=9606 GN=BMS1 PE=1 SV=1
O94653	Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bms1 PE=1 SV=2
Q08965	Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BMS1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003869 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04950 all species →	RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	Family	Interproscan
PF08142 all species →	AARP2CN	AARP2CN (NUC121) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007034 all species →	Domain	Ribosome biogenesis protein BMS1/TSR1, C-terminal	Interproscan
IPR030387 all species →	Domain	Bms1/Tsr1-type G domain	Interproscan
IPR039761 all species →	Family	Ribosome biogenesis protein Bms1/Tsr1	Interproscan
IPR012948 all species →	Domain	AARP2CN	Interproscan
IPR037875 all species →	Domain	Ribosome biogenesis protein Bms1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12858 all species →	RIBOSOME BIOGENESIS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000479 all species →	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14569	BMS1; ribosome biogenesis protein BMS1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.