Gene detail

Detailed information of ENSSJYP00000018453.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_046863286.1, histone-lysine N-methyltransferase PRDM9-like [Xenia sp. Carnegie-2017]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

ENSSJYT00000019309

ATGTGCCATAATCTGCAAACTGGCCAGGGCCctggtttcatttcatttcatctcatttctgATCTGGAATTACCCCTACACGGAACTCTGAGAGGGTTTGAGAAACTTGACTCTAATGGATCAAGAAACACAAAAGCTCGAGCTTCATTGCCTGAAGGATTTGAAATAAGAGAATCTGGAATGATTCCAGGCAGAGATGGTGTCTTCGCATTGATGCCAGTTTTTCTTAATACCCGATTTGGACCTTATGAAGGGCAACAGGTTGAAATGGCTGCTATTAATGATGGAAAGGACATAACGCACATGTGGGAGGTGAATGATGTGTCATACTTTATTGATGGCAGTGATGAAAACTTTGCTAACTGGATGAAATTTGTGAACTGTGCAAAAACGAAATCAGAACAAAATATGGTTGCATATCAATATGATAAAGAAATCTATTATCGAGTTTGTAAGAAAATCAACGTTGGTGACGAATTGTTAGTTTGGTACTCAGATGGCTATGACGATGAGGCAGGCTCTGAAAGCAAAGCTCATGAGAAATATTTCGGAAACGTTTCCACAAAAGACGTGAGGAATGGCAAAACTTTAGCGAATCGTTCGCAAAAACGACCTCAAACTATTCGCAATGTTACAGATGATGCTGAGGTATCGCAAAATAACTGCAATATTCGCGAAGGAGACACTGAGCGATCACGAAAAGCCCGCgaaattggcaaaaaagctCGATTGCAGCGTATACGAGTTAAATTGAAGGCGTCAACATATTGCGATATCTGTAAGAAGAACTTTACGACCGCTACATCGCTCGTAACACACTTGCGAATTCACACGGGCGAAAGACCATACGTTTGCGAGATTTGCGGCAAAGCTTTCAAGCAATCAGGCCCTTTGACATTGCATAAAAGAACGCACAGCGGGGAGCGGCCTTACGAGTGTGAAACATGCCAAAAGAGGTTCTTGTCTTCCTCAAGTCTAGCTAGGCACAAGCTCACCCATGGTTCTGTGAAGGAGCATCCATGTGACATTTGTAGCAAGAGGTTTTCGACCAAGGCGGATTTGAGAAATCACGTGCGGATTCACACGGGCGAAAAACCGTTCGAGTGTGACGTTTGCGGGCGGAGATTCGCGCAATCGTGCAACCTGAAGACACATAAACGGTCGCATTCCAAGGAAAAAGAGTATTCGTGTAACGTGTGCGGCAAATCTTTCCGTGAGCACATAGCGCTGATAAATCATATAGCAATGCACGCGGGAGAAACGGCATTCGCTTGCAACGTTTGCAGCATGGAATTTTCGCAGGCGTATAGCTTACACAAGCACATGTTCTCGCATTCGAAGCAGAGCGGGTTCTATTGCGATACGTGCGGCAAGATTTTCAAGTCAGAGTTTCGCCTAGCTGCTCACCAGTCAAGCCATTTGGCCAAGGAAAGCCACGTCTGCGGTGTCTGTGGCaaagattttcttttcagaGCAAGCCTAGCGGCACACGCGAGGATCCACAGCGACAAGAAACCGTATGTTTGCGACACGTGCGGTAAAGCGTTCAGGGAGTCGGGCTCGCTAAAAATGCACGTGCGGTTGCATACGGGAGAGAAACCTTTTGTTTGTGAGCTCTGCGGAAAAAGCTTCAGCCAATCAGGCCCCTTAACTCTGCATATGCGTACGCACACGGGGGAACGGCCGTTTGTTTGCGATATTTGCGAGTGTCGCTTTAGATCATCATGTAACCTTAAGCGGCACAAGCTCACGCATACGGGTGATAAACCTTTTTCGTGCGGCCAGTGCGGGAAGCGGTTTGCTACGTGTACCGGGTTGTCTCAGCACGAACGCGTGCATTCCGGCGAGAAGCCGTTCGTGTGCGATGTCTGCGGAAAGCGTTTTGCGCAGTCTTCTAACCTCAAGAAGCATACACTTGTTCATTCTAGTGACAAGCCGCACCGCTGCGACCTTTGCGGGAAAGAATTCCGTCACAAATGTAGCCTAACGACTCACATGCGGAGCCACACGGGTGAAAAACCGCACGTGTGCGACGTTTGCGGTAAATGTTACAGTCAACCGGCGACGCTTTCAAGGCATAAAGTTATTCATAATAAATAA

Transcript

ENSSJYT00000019309

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96EQ9	Histone-lysine N-methyltransferase PRDM9 OS=Mus musculus OX=10090 GN=Prdm9 PE=1 SV=2
P0C6Y7	Histone-lysine N-methyltransferase PRDM9 OS=Rattus norvegicus OX=10116 GN=Prdm9 PE=3 SV=1
Q9NQV7	Histone-lysine N-methyltransferase PRDM9 OS=Homo sapiens OX=9606 GN=PRDM9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000194 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214 all species →	Domain	SET domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR050752 all species →	Family	C2H2-type zinc-finger domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24384 all species →	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000018453.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.