Gene detail

Detailed information of ENSSJYP00000019179.1 in Catostylus mosaicus

Genomic Location: chr17:2730791...2746575
NR annotation: CAH3026126.1, unnamed protein product [Porites evermanni]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSJYT00000020052

ATGGAAGGACAGTATGGCGGCTCTTCAGACAGCCCTTACGGATATGAAGAGACTCTGATGCATGGACGATTCACATCAAATCTCAGAGAGTTTGCTCATGATTATGCAGTAAAActcaaatatcaaattgaaGAAGAACAGCAGAgagaaaaagatgatgatgatttcagATCCTTCAGTGGAAACACCTTTACGTGGCAATTAAAATaTTACTGGCGAAAGTTTTTGGTACTAATTGCGAATGATTACAGTTTTTTGTTCATCCTTGGGGTTTTAATGGCACTGATCAGTTTCATGTTggattatttcattgaaaaatgccaAATGGccCAAATTCTTCTTTATCAATTGGTAAATTTCAGTGTTGTTTTGCAATACCTGCTATGGATTGGCCTGCCACTTCTTCTCATTACATTTTCTGTTGGATTTGTTCACCTTGTCTCCCCCCATGCAATAGgTTCTGGCATTCCAGAAATGAAAGTTATTCTAAGAGGAACAGTTCTTCGAAGATACCTCTCATTTCCAACTTTTGTATCAAAGACGATTGGTTTAATTGCTGCCCTTGGAAGTGGGATTCCTATTGGCAAAGAGgGTCCATTTGTGCATATCTCAAGTATGGTTGCTCGAATGTTGAGTAAATTCATCAAGGCCTTTCATGGCATTTACGTGAATGAATCTCGGAATACTGACATGCTTGCTTGTGCCTGTGCTGTTGGTGTCTCAAGTAGTTTTGCTGCTCCAATTGGAgGTGTACTATTCAGTATCGAAGTAACTTCCATGTACTTTGCCGTGCGGAATTACTGGCGTGGATTTTTTGCCGCTGTTTGCGGAGCTTTCATGTTTCGCTTGCTTGCTGTCCTTGATAGCAGCGAAGAGACTATTACTGCATTATTCAAGACAAGATTCAGAATCGACTTTCCATTTGATGTTCAGGAATTTGTCGCTTTTGCTTTCATTGGACTAACCTGTGGTCTTGCTGGCGCTCTATTCGTTTACACTCATCGGAAGATCGTCGATTTCCATCAACATCACAAGCAAAACAAACTCAACAGATTTTTAGAGAAAAGtcGTTTTATTTACCCCGCAATCATTGTTTTGATCGTGTCCACCATCTCATTTCCTAAAGGATCCGGACAGTTTATTGCCGGACAGCTTACCGCTAAGGAGGCGCTGAGTGAATTGTTCTCCAATACCACGTGGTCTGCGCAGAATCCAACTCCTGCTTCGATGGAGGTTCTCAGGCATTGGCAGTCTTCATATTCAAGCATATACGTCACGCTTACAGTTTTTATCATTACTAAGTTTATATTAACAGCTGTTTGTGTTGCGTTGCCTGTACCAGCTGGTGTCTTTTTCCCAGTTTTCGTTGTTGGAGCTGGATACGGGCGCCTTGTGGGTGAATGCATGGCCACATGGTTTCCAAATGGTGTTAATACTCCCATAGTACCTGGAGGTTATGCTGTTGTTGgtGCGGCAGCCATGGCAGCAGCAGTCACTCATACCATTTCGACATctgttattgtttttgaacTTACAGGACAAATCACGCACATTCTACCTGTTATGatttctgttttgattgcaaatgctGTCGTTCAACAATTACAACCGAGTATTTATGACAGTATAATCGAGATCAAGAAACTTCCATACTTACCAGAGATCTCAAGACCTggATATATAATTAATGTTGGTGACATCATGGACACGCGGGTATTCTGCATATCAACACGCAGCACGTATTTGCAATTGAGAAATCTTCTACGAAAATCGAATCtcctatcatttgcatttgtgGATAAACCTGATTCGATGATCCTCCTCGGAAGTATTCGACGTCATCATCTTGAGAATCTACTCGGAAGGCAGTTATCAAGAAGCGAAGGTGGGCCTAAGAATGAAAATGGCGGACTCGAGCCAATACGAGAATTGAGTAGGGTTAGTTATACTCAAGGTAATGAATCAGTTGATGTTGTGTTCGAAGAGAAACAgGGAGGTGGGGCCAAGCCGCAACACAAGCCAAAGGTACCGAGAAAAAGTGCAAAAACAGCAGCTGTAAACACGCTTCAGAAGTTATTCATGCACACAAGCACGGAGTTGTCCGAGgCTGCAACATCTTCAGGGGAGTTTGGACAAGCTCAGtacCCAGCTTGGGAGATGGAGTTGCTGCACGAGGAGATTGATTTCTCGAACGTTCAAATCGACCCGGCACCATTTCAACTTGTAGAACAAACATCATTGTACAAGGCTCACAAGTTGTTTTGTTTGCTGAATTTGTCTCAAGCTTACGTGACGTCAATAGGTCGACTTATTGGAGTGGTCACTTTACAAGAGCTGCGCCTCGcgattcaaaatgaaaacttcTTCTTGGAAAGGAGAAAGCTGCGGAGGCAAAAGACGTTTCGTTTGCAGAGTGACAGCGAATTACCAGAGAATGAAAATCAAGACTCTGAAACTAATAACCAAACGCAATCGGAATCAGGACCGTAA

Transcript

ENSSJYT00000020052

GTCGTTCAAAGAGAGGACAGTGACAAGATGTCGTTGGAAAACGCTCTTCAAAATAGTATATTTACCAAAGATACCTGCGCTAAATGGAGTTCAAATGCAGCTAAATTAGCAATCTCGAGCCTCATATAAAATTTACTACTTGCAAGTACTTCAAACACGTTTCTTTGCAGTTATTTTATGGTAACCAGCGGGCCTAGGCCATATCCGCCAAACAGACAACCAACTGCAGTTCCTGGGGCAAATTAGTTTGCAAACATGGAAGGACAGTATGGCGGCTCTTCAGACAGCCCTTACGGATATGAAGAGACTCTGATGCATGGACGATTCACATCAAATCTCAGAGAGTTTGCTCATGATTATGCAGTAAAActcaaatatcaaattgaaGAAGAACAGCAGAgagaaaaagatgatgatgatttcagATCCTTCAGTGGAAACACCTTTACGTGGCAATTAAAATaTTACTGGCGAAAGTTTTTGGTACTAATTGCGAATGATTACAGTTTTTTGTTCATCCTTGGGGTTTTAATGGCACTGATCAGTTTCATGTTggattatttcattgaaaaatgccaAATGGccCAAATTCTTCTTTATCAATTGGTAAATTTCAGTGTTGTTTTGCAATACCTGCTATGGATTGGCCTGCCACTTCTTCTCATTACATTTTCTGTTGGATTTGTTCACCTTGTCTCCCCCCATGCAATAGgTTCTGGCATTCCAGAAATGAAAGTTATTCTAAGAGGAACAGTTCTTCGAAGATACCTCTCATTTCCAACTTTTGTATCAAAGACGATTGGTTTAATTGCTGCCCTTGGAAGTGGGATTCCTATTGGCAAAGAGgGTCCATTTGTGCATATCTCAAGTATGGTTGCTCGAATGTTGAGTAAATTCATCAAGGCCTTTCATGGCATTTACGTGAATGAATCTCGGAATACTGACATGCTTGCTTGTGCCTGTGCTGTTGGTGTCTCAAGTAGTTTTGCTGCTCCAATTGGAgGTGTACTATTCAGTATCGAAGTAACTTCCATGTACTTTGCCGTGCGGAATTACTGGCGTGGATTTTTTGCCGCTGTTTGCGGAGCTTTCATGTTTCGCTTGCTTGCTGTCCTTGATAGCAGCGAAGAGACTATTACTGCATTATTCAAGACAAGATTCAGAATCGACTTTCCATTTGATGTTCAGGAATTTGTCGCTTTTGCTTTCATTGGACTAACCTGTGGTCTTGCTGGCGCTCTATTCGTTTACACTCATCGGAAGATCGTCGATTTCCATCAACATCACAAGCAAAACAAACTCAACAGATTTTTAGAGAAAAGtcGTTTTATTTACCCCGCAATCATTGTTTTGATCGTGTCCACCATCTCATTTCCTAAAGGATCCGGACAGTTTATTGCCGGACAGCTTACCGCTAAGGAGGCGCTGAGTGAATTGTTCTCCAATACCACGTGGTCTGCGCAGAATCCAACTCCTGCTTCGATGGAGGTTCTCAGGCATTGGCAGTCTTCATATTCAAGCATATACGTCACGCTTACAGTTTTTATCATTACTAAGTTTATATTAACAGCTGTTTGTGTTGCGTTGCCTGTACCAGCTGGTGTCTTTTTCCCAGTTTTCGTTGTTGGAGCTGGATACGGGCGCCTTGTGGGTGAATGCATGGCCACATGGTTTCCAAATGGTGTTAATACTCCCATAGTACCTGGAGGTTATGCTGTTGTTGgtGCGGCAGCCATGGCAGCAGCAGTCACTCATACCATTTCGACATctgttattgtttttgaacTTACAGGACAAATCACGCACATTCTACCTGTTATGatttctgttttgattgcaaatgctGTCGTTCAACAATTACAACCGAGTATTTATGACAGTATAATCGAGATCAAGAAACTTCCATACTTACCAGAGATCTCAAGACCTggATATATAATTAATGTTGGTGACATCATGGACACGCGGGTATTCTGCATATCAACACGCAGCACGTATTTGCAATTGAGAAATCTTCTACGAAAATCGAATCtcctatcatttgcatttgtgGATAAACCTGATTCGATGATCCTCCTCGGAAGTATTCGACGTCATCATCTTGAGAATCTACTCGGAAGGCAGTTATCAAGAAGCGAAGGTGGGCCTAAGAATGAAAATGGCGGACTCGAGCCAATACGAGAATTGAGTAGGGTTAGTTATACTCAAGGTAATGAATCAGTTGATGTTGTGTTCGAAGAGAAACAgGGAGGTGGGGCCAAGCCGCAACACAAGCCAAAGGTACCGAGAAAAAGTGCAAAAACAGCAGCTGTAAACACGCTTCAGAAGTTATTCATGCACACAAGCACGGAGTTGTCCGAGgCTGCAACATCTTCAGGGGAGTTTGGACAAGCTCAGtacCCAGCTTGGGAGATGGAGTTGCTGCACGAGGAGATTGATTTCTCGAACGTTCAAATCGACCCGGCACCATTTCAACTTGTAGAACAAACATCATTGTACAAGGCTCACAAGTTGTTTTGTTTGCTGAATTTGTCTCAAGCTTACGTGACGTCAATAGGTCGACTTATTGGAGTGGTCACTTTACAAGAGCTGCGCCTCGcgattcaaaatgaaaacttcTTCTTGGAAAGGAGAAAGCTGCGGAGGCAAAAGACGTTTCGTTTGCAGAGTGACAGCGAATTACCAGAGAATGAAAATCAAGACTCTGAAACTAATAACCAAACGCAATCGGAATCAGGACCGTAAACAAGTATGCTCATTGAGAAATTGCtgttttgtaataaaatttcctatatttttcataattacTGCTACACgcattgtttataagaaacttatgGCTTATGGCTAGTGGCCACTGTTCTTTAGCAAACAAAACCTGTTATTTAAGTTATCTTAGGTTCTGGGCTTTTCAGCACTGTTGGGATCGTAGCTCACATTTACATGATTGTTTGGCGTGCTTTCCTGATTCCCACCCAACCAGGCTAGATTTGTTTGCTTTAGTTCTTAAACAATGATTGGCATTTTCATGACAGAAGCAATTATTCATAAATTAGAATCACTGTAATTGTATAAATGTAATTAATCAACATTATGAAAACTGTCCTTGATACTAGAATTAGATTTGATTTACAtgaaattcaaagtttttgatgattgaaaaattttcatccCTTGGAACCCATATGCAAATATTTCATCGATATTATGGTattttttacagcaaaaaGAATAGTAAATTACTCACTAACTGCATCAGAAAGTTGCTGTGGAAATTAGGCTGGCTTTGAAAACTGGGCTAATCCACTGCTCCAACTAAAAGGTCTTTAgttgaaaagaattttcaagtttttattccTCAGgatattattgttttcaaattcaacaaCTAAAAGATTTGTGTCCTAATGGCTTTCTccataaaaaacaaacatttagtTGAAGTTTTTAGTAGGAAGAGTAGAATCTGAATTAATCATACTGCCAGCACAGGACTAGCATTGATTTATGGACATTTATTAAAGAAGATTTAAGTAGATCTTAGAAGACACTAGTTTCCATACACGTGGGAACTGAACATAccaaattgctttgttcattttctcttcaattaaattctttgtaaaataaatatcGTTTTCTACAATGATTTACTAAATATATATCCATTTTCCCCACAATAtgttttatggtatttctcCATTCCCttctcaattttaatttttaaattctttttaaaccCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51788	Chloride channel protein 2 OS=Homo sapiens OX=9606 GN=CLCN2 PE=1 SV=2
P35525	Chloride channel protein 2 OS=Rattus norvegicus OX=10116 GN=Clcn2 PE=1 SV=1
Q9WU45	Chloride channel protein 2 OS=Cavia porcellus OX=10141 GN=CLCN2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004263 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00654 all species →	Voltage_CLC	Voltage gated chloride channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR001807 all species →	Family	Chloride channel, voltage gated	Interproscan
IPR050970 all species →	Family	Voltage-gated chloride channel	Interproscan
IPR014743 all species →	Homologous_superfamily	Chloride channel, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45720 all species →	CHLORIDE CHANNEL PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005247 all species →	Molecular Function	voltage-gated chloride channel activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05011	CLCN2; chloride channel 2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.