Gene detail

Detailed information of ENSSJYP00000020026.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_026061266.1, ubiquitin isoform X1 [Carassius auratus]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18101	Ubiquitin-ribosomal protein eL40 fusion protein OS=Drosophila melanogaster OX=7227 GN=RpL40 PE=1 SV=2
P63048	Ubiquitin-ribosomal protein eL40 fusion protein OS=Bos taurus OX=9913 GN=UBA52 PE=1 SV=2
P63050	Ubiquitin-ribosomal protein eL40 fusion protein OS=Canis lupus familiaris OX=9615 GN=UBA52 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000498 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF01020 all species →	Ribosomal_L40e	Ribosomal L40e family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050158 all species →	Family	Ubiquitin and ubiquitin-like	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR038587 all species →	Homologous_superfamily	Large ribosomal subunit protein eL40 superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR001975 all species →	Domain	Large ribosomal subunit protein eL40 domain	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666 all species →	UBIQUITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0019941 all species →	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0031386 all species →	Molecular Function	protein tag activity	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000020026.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.