Gene detail

Detailed information of ENSSJYP00000020598.1 in Catostylus mosaicus

Genomic Location: :...
NR annotation: XP_047139857.1, large subunit GTPase 1 homolog [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSJYT00000021509

TTGCACATGATGATGAGTAGGTAAAAGATAAAGTTAATTTGAAGTAGAAGAATAATTAAAGTGATAATAAACATGGGGAAGAAGAACAAGTCAAACCTCGGAAATGCACTTATGCGGAGCAAAAAAGCACCTGGTTCTTTTGGAGGCAGCATGcGCCATACAACTGATGTCCATGATGAGAGTGGAAAAGGAATTTTGCAATCAGTAACAGAACAAGATGCACTCagtgattttatttcaactgcTGAACTTGCAAACAGAGAATTCACGGCagAGAAAGTAAACACAACAACTATTGTGACATCTGCCCATGTTCCTGGCATTTTGACTGAGGAGGAAATGAAAGAAGTGAAAAAGTTTCAAGatgcaaataaagaatttcttAATATTCCTAGAAGGCCATTTTGGGACAGCACCACTTCACCAGAGCAACTTGAAATGGCTGAGAGAGAAGCGTTTTTGCAATGGAGGAGACAGCTTGCATTgcttgatgaaaaagatgaaaagttAGTTTTAACACCATacgaaaagaacattgatatTTGGCGCCAGTTATGGAGGGTCATTGAAAGAAGtgaTGTTTTGTGTCAAATCGTTGATGCCAGGAATCCACTCTTGTTCAAATGTGATGATGTTGAGAGATATGTGAAAGAAGTTAGTGAAGACAAAGACAATATAATCATAGTAAACAAGGCTGATTATTTAACAGAGAAGCAAAGaaaatattgggcagattattttgcatcaaaaaatataaacGTCATATTTTGGTCAGCACTAATTGCAAGCATGTCGGAAAATGAACTTCAAGAGACAAGCGATGTTGATGATCAAATGAGGgatgaaagaaatattgatgaCGTCAATGAAGAGATGTTAGATGTACAAGATGAAGGACTTGAGGATGACAATGGACAGGAGGCTTCAATGgacaataaaaatgcaattggGACTCAAATGGAGTTTGAAGAAGAGCAAGGTATTCACAGTGAAACAAATAATGTTAAAGATGACATGAACGATAAAACAGACAGTTTTTGCGGATGTAATAAAGATGATGCCTCTAAAGAAAGGGAAaggaaagagaagagaaatgaTTTGGAGAGTTgcaattcattattttctagAGAAGAActcattgattattttgaaaagttaaaattgagaaaatgtcCTGAAAAAGATAGAATAATGATTGGAATGGTTGGATTTCCAAATGTTGGTAAAAGTTCTACAATAAACGCATTACTTGGAGATAAAAAAACATCAGTTTCATCAACTCCTGggaaaacaaagcattttcagACGATAAACATCAGCCAAACAGTTTGCTTATGTGATTGTCCTGGTCTTGTCTTCCCTACATTCGTTTCTACAAAAGctgaaatgattttaaatggTATTTTGCCTGTTGATCAGATGAGAGATTATCGACCTCCAACAACTCTTCTTTGCAAACTTGTTCCGCGTGACGTATTAGAATCTGTTTATGGCATTAACGTTAAACGACCCGAAGAGTGGGAAGACTCCAATCGACCACCCACTGCTGATGAATTTTTATCTGCATACTCAATTATGCGTGGCTTTATGACGTCACATGGAATGCCTGACTGCTCACGTGGTTCAAGATATATCATTAAAGATTTTCTAAATGGCAAACTTCTCTACAGTGAACCACCACCAGGAATTACTAACTCTGACTTCGAACCTGTTCATATCTTAAAAGAAAAGCTGCAACCCAGAAAGAGAAAAGATAATGAGgagccaaaaaagtttaaaaataaagtgGACAAGGAATTTTTCTCAAAGGGCGACAGTGGAGCGCATTATAATGCACCTTCGGGATTACGTCATGTGGAAGGAGACAGACTTGCACAAGAAGGCAAGCCATGgaagaaacattttaatagaaacaaaaaagaaaaattgcgaCGTATAAAAAATGAGtaatatcatattttcatgcgATTTTTCATGTCTATATCGGATACAATTTCATGTTCTTATTCGTCTATCCTTTTCCTTTAAACATCAAAAACACTGGCCTAGCAATTATGATAGTTGTTTTAAATGATCTTCTAGCATTTTGCGATatatttttggtattttatAATCTCATGGAAAACTAATTTAGAGAAAA

Protein

Uniprot

Uniprot term	Description
Q2YDM7	Large subunit GTPase 1 homolog OS=Bos taurus OX=9913 GN=LSG1 PE=2 SV=1
Q3UM18	Large subunit GTPase 1 homolog OS=Mus musculus OX=10090 GN=Lsg1 PE=1 SV=2
Q5ZJD3	Large subunit GTPase 1 homolog OS=Gallus gallus OX=9031 GN=LSG1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR023179	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan
IPR030378	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan
IPR043358	Family	Ras GTPase GNL1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45709	LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0000054	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14539	LSG1; large subunit GTPase 1	EC:3.6.1.-	Ribosome biogenesis	ko03009	deepkoala