Genomic Location: chr20:4914489...4921885
NR annotation: XP_031571447.1, elongator complex protein 3 [Actinia tenebrosa]
Species Catostylus mosaicus · all data for this species · gene families
| CDS |
| ENSSJYT00000021522 |
| Transcript |
| ENSSJYT00000021522 |
| Protein |
| ENSSJYP00000020611.1 |
| UniProt accession | Description |
|---|---|
| Q5ZHS1 | Elongator complex protein 3 OS=Gallus gallus OX=9031 GN=ELP3 PE=2 SV=1 |
| Q9VQZ6 | Elongator complex protein 3 OS=Drosophila melanogaster OX=7227 GN=Elp3 PE=1 SV=1 |
| Q5HZM6 | Elongator complex protein 3 OS=Xenopus laevis OX=8355 GN=elp3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004592 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04055 all species → | Radical_SAM | Radical SAM superfamily | Domain | Interproscan |
| PF13673 all species → | Acetyltransf_10 | Acetyltransferase (GNAT) domain | Domain | Interproscan |
| PF16199 all species → | Radical_SAM_C | Radical_SAM C-terminal domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000182 all species → | Domain | GNAT domain | Interproscan |
| IPR006638 all species → | Domain | Elp3/MiaA/NifB-like, radical SAM core domain | Interproscan |
| IPR034687 all species → | Family | Elongator complex protein 3-like | Interproscan |
| IPR016181 all species → | Homologous_superfamily | Acyl-CoA N-acyltransferase | Interproscan |
| IPR007197 all species → | Domain | Radical SAM | Interproscan |
| IPR032432 all species → | Domain | Radical SAM, C-terminal extension | Interproscan |
| IPR039661 all species → | Family | ELP3/YhcC | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11135 all species → | HISTONE ACETYLTRANSFERASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016747 all species → | Molecular Function | acyltransferase activity, transferring groups other than amino-acyl groups | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0002926 all species → | Biological Process | tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0033588 all species → | Cellular Component | elongator holoenzyme complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07739 | ELP3, KAT9; elongator complex protein 3 (tRNA carboxymethyluridine synthase) | EC:2.3.1.311 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
