Gene detail

Detailed information of ENSSJYP00000021596.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_001625765.2, rho guanine nucleotide exchange factor 12 isoform X17 [Nematostella vectensis]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

ENSSJYT00000022549

ATGAAGAGAAAGCATATTATGCCTCCCGAGCTCATTCAAGAGATTTTCCCTAATTTAGAAGAGTTAATAGAAATCCACACCTCTCTTCTCGCCGACTTGAATACGAGGTGTGCCCAGCAGGGAGACGTCATAACCACGATATCAGATATCATTTTAGCAAGGTTTGATGGTGCACCTGGTGAAAAGGCGAAAGAAGTTGCCGCTGCCTTCAATCAAAATCAGAGGATGGCAATGGAAATGCTGAAGaatCGCATAAAGAAAGACCAGAAACTCGCAGCGTTTATGGCTCGACAAGAGGAATCAAAGTACTGCAGGAGACTAAAATTCAATGACATTATGGCAAATACTCATCAACGGTTGACAAAATATCCGTTACTTGTAAGGGAAATGCTGAAATCTACTTCATcttCAAGTGCAGACCACAAAGAGCTGGAGCGTTGTAAAAAATGTTGTTTGGACATTTTGGACCATGTCAATAAAACTATGAAGGAAACAGAAAATAAGTTGCGATTGATTgaactttcaaaaaaaatcgACATGAAAGCATTAGaaggaaatacaaaaatagcAGAAGAATTTAAGGACTTCGATTTAACTAAACATAAATTAATCCACGAGGGTGATTTAACATGGCGAATTAATCGAGCAAAAACAATAGAGTTGCACGTACTACTTCTAGATTTATATATGATTCTCCTACAAAAACAAGATGATAAATTAGTGTTAAAATCGCACAGCACCACAGTATCTGCTGGTGCTCAAGATATGAAGACAACACACAGTCCGATTATCAAACTTCAATCATTATTAACAAGAGATGTTGCAACCGATAAAAGAGCGTTTTTTCTGGTCATCACATCATCAGCTGGACCACAAATTTACGAATTAGTAACTTCAACGATAACAGAACGAACTATgtGGGTGAGCTTAATTACAGAATGTGCTGAAAAGCCAACAAGGAAATCTAAAGAACGGGGTCGACGTGGTGCACTTTGCCTTCCACAGTCTCCAAGTGTGTCACTTTCTGAATCGATTGAAGAGGAGAATGATGAAATTCGCCCGCACGACAGTTCAAGTCGACGAGGGTCGTCTGTGACTAAAAACGAGGAAATTAAGGAAGACGAGGTTCAAGAGGATGATAAAGAGAAAGAGGTTTTTGAGGAATTTGAAGCAGTTGAAGTGCAGGCAGATGAAAAACCCAAACAAGTATTTGAACCACCTTCGAAGGAAAGAATGGCGGAATTGCTCGAACAACTTCGAATAAAAGATGATGAGATAAAAACATCACTTGAAGACAAAGCCAGAATTATCGCAGAATTACGGTGTCAAGAATTCGGCCCCACCGTCACACTTGAGtCATCTGCAAATGACAATCAATCGGGAGCCAGagaTATCATCTTTGCTGCAATTCTGCAagCTGATCGGCTAACCAAAGCAGTCAGCCAATTGTTGACACCACATCATCATACTGACAGCAACGGACTCGTTGATATGAGAACCGTCTCTCCAAATTCTTCCATCGTTTCAAATGGACTTTCAAGGGAAGACACCCAAAATGAAGATGAGAGCATATTGCAACAACCACAGGAAGTTCTTGTGGAAACAACTGCAGCAATAAATGAGCAACTGACTAGTCTGATGcgCATTATAACTGAGGAAGAAAGTACCATTGAGAGACTTCGAAGCGACCTTCAAGAATCGCAGTCGACAATCAAACGCCTGATGCAAACGAACTCTGAAGTTGCAAGCGAAACTGGGGAGTCACCCGATGTCGTCCCATCTTCGAGTATGCCATCATTAGgtagttttaattcaaatgcAGGAACCCCAACACAAGCACCTGGCATTTTTGTCGTGTCGGATGATGTTTCTGAAGaTTCGAGTAGATCGGAAGTATTTGACGAAGCAAAATCATCTGATAATACAGGGcaATCTTCACCCATTCAATCGATCAGTAGCGATGACCCTGTGTTGATGTCTAATCCGTTCAAGTCACCAAGAGGAAAGTCGATCGATTCTGATCCATCCGCAACTGAACGAGTTGAAAGATCGTTGTCATTTCCTGGTTCAACTAGACCGTATAACACAGAAAGATGA

Transcript

ENSSJYT00000022549

CTGGTTTGTTCTGCTGTGGAATTCTaagtatttttctcaaataggATGACGATCTGGAAGTTGAAGACATTCCTTGTTTGCCATGGTCTCAAACAGTGGAAAAAAAGGTTTTCTTAAAGCCGATGAAGAGAAAGCATATTATGCCTCCCGAGCTCATTCAAGAGATTTTCCCTAATTTAGAAGAGTTAATAGAAATCCACACCTCTCTTCTCGCCGACTTGAATACGAGGTGTGCCCAGCAGGGAGACGTCATAACCACGATATCAGATATCATTTTAGCAAGGTTTGATGGTGCACCTGGTGAAAAGGCGAAAGAAGTTGCCGCTGCCTTCAATCAAAATCAGAGGATGGCAATGGAAATGCTGAAGaatCGCATAAAGAAAGACCAGAAACTCGCAGCGTTTATGGCTCGACAAGAGGAATCAAAGTACTGCAGGAGACTAAAATTCAATGACATTATGGCAAATACTCATCAACGGTTGACAAAATATCCGTTACTTGTAAGGGAAATGCTGAAATCTACTTCATcttCAAGTGCAGACCACAAAGAGCTGGAGCGTTGTAAAAAATGTTGTTTGGACATTTTGGACCATGTCAATAAAACTATGAAGGAAACAGAAAATAAGTTGCGATTGATTgaactttcaaaaaaaatcgACATGAAAGCATTAGaaggaaatacaaaaatagcAGAAGAATTTAAGGACTTCGATTTAACTAAACATAAATTAATCCACGAGGGTGATTTAACATGGCGAATTAATCGAGCAAAAACAATAGAGTTGCACGTACTACTTCTAGATTTATATATGATTCTCCTACAAAAACAAGATGATAAATTAGTGTTAAAATCGCACAGCACCACAGTATCTGCTGGTGCTCAAGATATGAAGACAACACACAGTCCGATTATCAAACTTCAATCATTATTAACAAGAGATGTTGCAACCGATAAAAGAGCGTTTTTTCTGGTCATCACATCATCAGCTGGACCACAAATTTACGAATTAGTAACTTCAACGATAACAGAACGAACTATgtGGGTGAGCTTAATTACAGAATGTGCTGAAAAGCCAACAAGGAAATCTAAAGAACGGGGTCGACGTGGTGCACTTTGCCTTCCACAGTCTCCAAGTGTGTCACTTTCTGAATCGATTGAAGAGGAGAATGATGAAATTCGCCCGCACGACAGTTCAAGTCGACGAGGGTCGTCTGTGACTAAAAACGAGGAAATTAAGGAAGACGAGGTTCAAGAGGATGATAAAGAGAAAGAGGTTTTTGAGGAATTTGAAGCAGTTGAAGTGCAGGCAGATGAAAAACCCAAACAAGTATTTGAACCACCTTCGAAGGAAAGAATGGCGGAATTGCTCGAACAACTTCGAATAAAAGATGATGAGATAAAAACATCACTTGAAGACAAAGCCAGAATTATCGCAGAATTACGGTGTCAAGAATTCGGCCCCACCGTCACACTTGAGtCATCTGCAAATGACAATCAATCGGGAGCCAGagaTATCATCTTTGCTGCAATTCTGCAagCTGATCGGCTAACCAAAGCAGTCAGCCAATTGTTGACACCACATCATCATACTGACAGCAACGGACTCGTTGATATGAGAACCGTCTCTCCAAATTCTTCCATCGTTTCAAATGGACTTTCAAGGGAAGACACCCAAAATGAAGATGAGAGCATATTGCAACAACCACAGGAAGTTCTTGTGGAAACAACTGCAGCAATAAATGAGCAACTGACTAGTCTGATGcgCATTATAACTGAGGAAGAAAGTACCATTGAGAGACTTCGAAGCGACCTTCAAGAATCGCAGTCGACAATCAAACGCCTGATGCAAACGAACTCTGAAGTTGCAAGCGAAACTGGGGAGTCACCCGATGTCGTCCCATCTTCGAGTATGCCATCATTAGgtagttttaattcaaatgcAGGAACCCCAACACAAGCACCTGGCATTTTTGTCGTGTCGGATGATGTTTCTGAAGaTTCGAGTAGATCGGAAGTATTTGACGAAGCAAAATCATCTGATAATACAGGGcaATCTTCACCCATTCAATCGATCAGTAGCGATGACCCTGTGTTGATGTCTAATCCGTTCAAGTCACCAAGAGGAAAGTCGATCGATTCTGATCCATCCGCAACTGAACGAGTTGAAAGATCGTTGTCATTTCCTGGTTCAACTAGACCGTATAACACAGAAAGATGATCATCACTACAATTTGAATGTTGTCTAAAAGAACTTTGAGCAAAGTAACTCCCTCGTTTTGCTTAATCTGTCCTTTATGCATTTGTAAACAACAATGGTGCGTTATCGAGGGTATTCTATTTCCTCTCAATTGGTTTGGGTTACGTCTTGCTGATCACATCCCTTTCAATGTTCTGTTATGTACACAGTTTTATCACCCAGttcaaagttttgaattaATACCAAGCCTGTAAGACGAAAGATAACACAGTCTTCAGTTTTTCCACCTATTCATTGTACAAATGATTTCTGCCGGACTGGCAGCTGCTAAAGGCTTCTAATAGAAAGAcctttataaaaagaaatcaaatgacGTTTATTTTAAACCGAACCTCGATATTTAACGCAATTTGGCCGtgtgtttttatttcctttgaaaaataggCGTATCATTTACTTTGACCTCTGTTGTAAACATTATTGTCTGCGTGGCCAAGGTTTTCAGATTAATGAGCGATCAGAATAATCTGTTTTTGGAGGGCAAAGGTGACGTCACTTGCCAACACATACCATCAAGTTACATGCCTTGCTCTTGCATATATGCGCAGTGTACCTTCCTTTTGAGAGGAAATACAGCAAGGAGGGCTGTTCAGATTCCGATGATCAAAATTGGTATTCAATCCATATTGCCATCTCATTTCGGATTGTTGTTGCTCTGACAATAATGTTGCTGCAGAGAAACCTTTGACCATCGCTACACGGAGACTAAAAGCTTCTGCGATCCCCATCATCTTCCTCTTTTCTGCAAATACAAATGTGTTGCTGATTTTTTGTCTGGGGGTTTCTAGACCTTCACGGCTCCAATTCATAATCACCCTGAGCTCAAATTATAGTTACTTTAATTGTAGCACGCACATGCAGTGCTGTCAAATTTGTTTCTCCTGAATGACCCGGACCCTCACCTTCAATTTCCAAAACGTAAACTCAGAAATCTTTTAGTGCTCCGCAGCTCTTGCTTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15085	Rho guanine nucleotide exchange factor 11 OS=Homo sapiens OX=9606 GN=ARHGEF11 PE=1 SV=1
Q9ES67	Rho guanine nucleotide exchange factor 11 OS=Rattus norvegicus OX=10116 GN=Arhgef11 PE=1 SV=1
Q92888	Rho guanine nucleotide exchange factor 1 OS=Homo sapiens OX=9606 GN=ARHGEF1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001658 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17838 all species →	PH_16	PH domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR041020 all species →	Domain	ARHGEF1-like, PH domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45872 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0001664 all species →	Molecular Function	G protein-coupled receptor binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000021596.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.