Gene detail

Detailed information of ENSSJYP00000021743.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_015761830.1, PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJ41	Pre-mRNA-splicing factor 18 OS=Bos taurus OX=9913 GN=PRPF18 PE=2 SV=1
Q8BM39	Pre-mRNA-splicing factor 18 OS=Mus musculus OX=10090 GN=Prpf18 PE=1 SV=1
Q99633	Pre-mRNA-splicing factor 18 OS=Homo sapiens OX=9606 GN=PRPF18 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006751 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08799 all species →	PRP4	pre-mRNA processing factor 4 (PRP4) like	Domain	Interproscan
PF02840 all species →	Prp18	Prp18 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036285 all species →	Homologous_superfamily	PRP4-like superfamily	Interproscan
IPR014906 all species →	Domain	Pre-mRNA processing factor 4 (PRP4)-like	Interproscan
IPR039979 all species →	Family	Pre-mRNA-splicing factor 18	Interproscan
IPR004098 all species →	Domain	Prp18	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13007 all species →	PRE-MRNA SPLICING FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000350 all species →	Biological Process	generation of catalytic spliceosome for second transesterification step	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071021 all species →	Cellular Component	U2-type post-spliceosomal complex	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12817	PRPF18, PRP18; pre-mRNA-splicing factor 18	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.