Gene detail

Detailed information of ENSSJYP00000022212.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_047124045.1, coatomer subunit beta' isoform X1 [Hydra vulgaris]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

ENSSJYT00000023200

ATGCCGCTCAGACTTGATGTAAAGAGAAAGCTGTCAGCTAGATCTGACAGAGTGAAATGTGTTGACCTGCATCCAACTGAACCTTGGCTTTTAGCAAGTTTGTACAATGGGAATGCCCATGTTTGGAATCATGAGTCACAAACTCTTATCAAATCATTTGAAGTTACTGATTTGCCAGTGCGTGCTGGCAAATTTGTTGCAAGGAAAAACTGGGTGGTTACTGGATCAGACGATatgatgattaaaattttcaactatAATACACTTGAGAAGGTGTATGGATTTGAAGCACATTCAGACTATCTTCGATCTTTACAAGTTCACCCAACTCAACCTTATTTGATTAGCAGCAGTGATGATATGACAATTAAGTTATGGGACTGGGACAAGAAATGGGCCTGCATTCAGGTTTTTGAAGGTCACACTCACTACGTCATGCAGGTTGTCATCAATCCAAAAGACAACAATCAATTTGCAAGTGCTTCCCTGGACAGAACGATTAAGGTATGGCAGCTTGGTTCAGCATCGCCAAACTTTACCCTGGAAGGACATGATAAAGGAGTCAATTGTTTGGACTATTTCCATGGCGGCGACAAGCCTCACCTTGTATCAGGTGCGGACGATAGATCTGTGAAGATCTGGGATTACCAGAATAAGACATGTGTACAAACTCTTGAAGGCCATGCTCTGAATGTTTCGTCAGTCATTTTCCATCCTACATTGCCAGTTATTTTATCTGGATCTGAAGACGGTACTGTTCGAATTTGGCATGCGAATACCTACCGTTTAGAGAGCACGTTAAACTATGGTATGGATCGTGTGTGGGCGATGGCAAGTATGAAAGGCTCCAATAATGTTGCTATTGGATACGATGAAGGCAGCATAATGGTTAAGCTTGGCCGTGAAGAACCAGCCATGTCAATGGACAATGCaggcaaaattatttttgcgaAGCACAGTGAGATCCTGcaagcaaatttaaaaaatcttgGAGATGCTGAAGTGAATGATGGCGAAAGATTGCCATTGGCTGTTAAGGAGATGGGTTCCTGCGAGATATATCCACAGAACTTAGCTCATAATCCAAATGGTCGATTTGTTGTTGTATGTGGTGATGGTGAATACATTATTTACACTGCAATGGCCTTGAGGAACAAAAGCTTTGGCAGCGCACAGGAATTTGTTTGGGCAGCCGACTCATCCGAGTATGCAGCTAGGGATGGGAGCAAAGTAAAACTTTTCAAGAActtcaaagaaagaaaatcatttaaacCTGATTTTGGAGCAGAAAATATTTTCGGAGGAGCGCTATTGGGTGTTCGATCGCCAAGTGGATTATCGTTTTACGATTGGGAAACCACAGAACTGATTCGTAGGATTGAAATCCAGCCAAAAAATGTTTTCTGGTCAGACAGTGGAGAGCTTTGCTGCATTGCTACTGAAGACTCTTTCTTTATCTTGAAATACAGTCAAGAGGCGGTGTCGAGAGCCTTGGAGAATAAAGATGACCTTATCACTGAAGATGGGATAGAAGATGCATTTGAGCCTCTATCGCAAATCGaagaaattatcaaaactgGAATTTGGGTTGGAGATTGTTTCATATATACAAACACAGTAAATCGCTTGAACTACTTTGTCGGTGGTGAAATTGTCACAGTCTCACATCTCGACCGAGATATGTACCTTCTTGGCTACATACCAAAGGACAACCGGCTTTATCTGGCTGACAAGGAGCTGAATGTAGTTAGTTACTCGCTGCTACTTTCAGTATTGGAATATCAAACCGCTGTTATGAGGaaagattttgatactgcGAAGGAGGTTCTTCCAACAATACCTAAAGAACAAAGAAACCGAGTTGCACATTTCCTCGAGAAACAAGGATTCAAGCAACAGGCTTTGGTTGTGTCATGTGATCCAGAGCATAAGTTTGAGCTTGCATTGCAAATTGGAGACTTGAAAGTTGCCTATGAAATTGCGGTTGACGCTGATtCGGAACACAAATGGAAGCAGTTAGCTGAGCTTGCAATCCAAAGCTGTGAATTTCCACTTGCCCAGGAATGTCTATTTAAAGCACAAGATTATGCCGGTTTGCTTTTGTTGGCCAGCTGCTCGTGCGATGCCAATATGATGCACAAGCTAGCCACGGATGCAGAAAAGAATGGCAAATATAATGTAGCATACCTTGCTTACTTTTCACTTGGAAGACTTGAAGATTGTCTTGAATTGCTATGCAAATCTAATAGATTGCCAGAAGCAGCATTCCTTGCTCGCACATATTTACCGAGTCATGTGTCAAGAGTTGTTCAATTGTGGAAAGAGGATTtggcaaaaacaaacaaaaaagccGCTGACTCCTTGGCGGATCCAACTCAGTATGAAAATCTGTTTCCAGACCTTCAAGAAGCAATCAAAGCTGAAAAGGTTTTGAAAGAGGAAAGAATTCATCTTCAACCTGCAGCCAGCTACAAGAACCTGCCCtgCAATCTCGatagaaacatttttgaagAGATGAAACAAGCCACGGAAAAGGGAATTAATTTGGATGAGGTTTCGGAAGCAGCAGAAAACTTGCGATTGGCAGATCCGACCCCTGATGAGCAACCGCCAGTAGACAGTAAATCCCTCCCTACCTCCGATTTTGTCAAACAGGATGTCGAAAAGGATGCGAATGTAAATGAGAAACCGATTCCATCAAATGAGCCGGATGCTGGTGGAACAGTGAGCAATGAAAATCGTTCCGATAGTCCAGATCTAGACATTGATAGTGATTTGGACAATTTTGAAGATGTTGGCGACGGAGATGACgatATTGATATAGATGATATGGACGATGACATTTga

Transcript

ENSSJYT00000023200

ACCTGGAGAAGTGGAAGAAGGGAGAAAATAGTTTCGAAAAAAGGTAGCTCTGGAAAGTGAAAATAATGCCGCTCAGACTTGATGTAAAGAGAAAGCTGTCAGCTAGATCTGACAGAGTGAAATGTGTTGACCTGCATCCAACTGAACCTTGGCTTTTAGCAAGTTTGTACAATGGGAATGCCCATGTTTGGAATCATGAGTCACAAACTCTTATCAAATCATTTGAAGTTACTGATTTGCCAGTGCGTGCTGGCAAATTTGTTGCAAGGAAAAACTGGGTGGTTACTGGATCAGACGATatgatgattaaaattttcaactatAATACACTTGAGAAGGTGTATGGATTTGAAGCACATTCAGACTATCTTCGATCTTTACAAGTTCACCCAACTCAACCTTATTTGATTAGCAGCAGTGATGATATGACAATTAAGTTATGGGACTGGGACAAGAAATGGGCCTGCATTCAGGTTTTTGAAGGTCACACTCACTACGTCATGCAGGTTGTCATCAATCCAAAAGACAACAATCAATTTGCAAGTGCTTCCCTGGACAGAACGATTAAGGTATGGCAGCTTGGTTCAGCATCGCCAAACTTTACCCTGGAAGGACATGATAAAGGAGTCAATTGTTTGGACTATTTCCATGGCGGCGACAAGCCTCACCTTGTATCAGGTGCGGACGATAGATCTGTGAAGATCTGGGATTACCAGAATAAGACATGTGTACAAACTCTTGAAGGCCATGCTCTGAATGTTTCGTCAGTCATTTTCCATCCTACATTGCCAGTTATTTTATCTGGATCTGAAGACGGTACTGTTCGAATTTGGCATGCGAATACCTACCGTTTAGAGAGCACGTTAAACTATGGTATGGATCGTGTGTGGGCGATGGCAAGTATGAAAGGCTCCAATAATGTTGCTATTGGATACGATGAAGGCAGCATAATGGTTAAGCTTGGCCGTGAAGAACCAGCCATGTCAATGGACAATGCaggcaaaattatttttgcgaAGCACAGTGAGATCCTGcaagcaaatttaaaaaatcttgGAGATGCTGAAGTGAATGATGGCGAAAGATTGCCATTGGCTGTTAAGGAGATGGGTTCCTGCGAGATATATCCACAGAACTTAGCTCATAATCCAAATGGTCGATTTGTTGTTGTATGTGGTGATGGTGAATACATTATTTACACTGCAATGGCCTTGAGGAACAAAAGCTTTGGCAGCGCACAGGAATTTGTTTGGGCAGCCGACTCATCCGAGTATGCAGCTAGGGATGGGAGCAAAGTAAAACTTTTCAAGAActtcaaagaaagaaaatcatttaaacCTGATTTTGGAGCAGAAAATATTTTCGGAGGAGCGCTATTGGGTGTTCGATCGCCAAGTGGATTATCGTTTTACGATTGGGAAACCACAGAACTGATTCGTAGGATTGAAATCCAGCCAAAAAATGTTTTCTGGTCAGACAGTGGAGAGCTTTGCTGCATTGCTACTGAAGACTCTTTCTTTATCTTGAAATACAGTCAAGAGGCGGTGTCGAGAGCCTTGGAGAATAAAGATGACCTTATCACTGAAGATGGGATAGAAGATGCATTTGAGCCTCTATCGCAAATCGaagaaattatcaaaactgGAATTTGGGTTGGAGATTGTTTCATATATACAAACACAGTAAATCGCTTGAACTACTTTGTCGGTGGTGAAATTGTCACAGTCTCACATCTCGACCGAGATATGTACCTTCTTGGCTACATACCAAAGGACAACCGGCTTTATCTGGCTGACAAGGAGCTGAATGTAGTTAGTTACTCGCTGCTACTTTCAGTATTGGAATATCAAACCGCTGTTATGAGGaaagattttgatactgcGAAGGAGGTTCTTCCAACAATACCTAAAGAACAAAGAAACCGAGTTGCACATTTCCTCGAGAAACAAGGATTCAAGCAACAGGCTTTGGTTGTGTCATGTGATCCAGAGCATAAGTTTGAGCTTGCATTGCAAATTGGAGACTTGAAAGTTGCCTATGAAATTGCGGTTGACGCTGATtCGGAACACAAATGGAAGCAGTTAGCTGAGCTTGCAATCCAAAGCTGTGAATTTCCACTTGCCCAGGAATGTCTATTTAAAGCACAAGATTATGCCGGTTTGCTTTTGTTGGCCAGCTGCTCGTGCGATGCCAATATGATGCACAAGCTAGCCACGGATGCAGAAAAGAATGGCAAATATAATGTAGCATACCTTGCTTACTTTTCACTTGGAAGACTTGAAGATTGTCTTGAATTGCTATGCAAATCTAATAGATTGCCAGAAGCAGCATTCCTTGCTCGCACATATTTACCGAGTCATGTGTCAAGAGTTGTTCAATTGTGGAAAGAGGATTtggcaaaaacaaacaaaaaagccGCTGACTCCTTGGCGGATCCAACTCAGTATGAAAATCTGTTTCCAGACCTTCAAGAAGCAATCAAAGCTGAAAAGGTTTTGAAAGAGGAAAGAATTCATCTTCAACCTGCAGCCAGCTACAAGAACCTGCCCtgCAATCTCGatagaaacatttttgaagAGATGAAACAAGCCACGGAAAAGGGAATTAATTTGGATGAGGTTTCGGAAGCAGCAGAAAACTTGCGATTGGCAGATCCGACCCCTGATGAGCAACCGCCAGTAGACAGTAAATCCCTCCCTACCTCCGATTTTGTCAAACAGGATGTCGAAAAGGATGCGAATGTAAATGAGAAACCGATTCCATCAAATGAGCCGGATGCTGGTGGAACAGTGAGCAATGAAAATCGTTCCGATAGTCCAGATCTAGACATTGATAGTGATTTGGACAATTTTGAAGATGTTGGCGACGGAGATGACgatATTGATATAGATGATATGGACGATGACATTTgatcaaataaatttattgattacTAACATTTCTCAAATAAAGTTATATCGTAAAATTTGCAGTGTTTGATACGTTCTGAATGTATATCAAATATGTCATGTACgtattgaaatatatttgtttgttttttatttttcgctGAATGGCTTTCCATCTtgccaatatttttcaacacaGCGTTTGAACTTTGCAAgaagaaacattttaaaaacatttatttgcagtattcttgtttcttttcaaacaGTAATCACGCTAGTGTGCATAAGATTTAATgaactttattttgaatgtGTAGAAGGACGCAAGCCTTCAACACCAAAACGTTTATTTGAGGTATTAGATTCTTTATTAAAGACTTCATTAAATCATATAGTTTGCAAGgagattgaaaaacaaaatacaaattata

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35142	Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3
P35605	Coatomer subunit beta' OS=Bos taurus OX=9913 GN=COPB2 PE=1 SV=3
O55029	Coatomer subunit beta' OS=Mus musculus OX=10090 GN=Copb2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004164 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04053 all species →	Coatomer_WDAD	Coatomer WD associated region	Repeat	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR006692 all species →	Domain	Coatomer, WD associated region	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR016453 all species →	Family	Coatomer beta' subunit (COPB2)	Interproscan
IPR050844 all species →	Family	Coatomer complex subunit	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19876 all species →	COATOMER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17302	COPB2, SEC27; coatomer subunit beta'	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.