Gene detail

Detailed information of ENSSJYP00000022951.1 in Catostylus mosaicus

Genomic Location: chr3:11929789...11957796
NR annotation: CAH3126833.1, unnamed protein product [Porites lobata]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSJYT00000023974

ACGTTTTGACATTGGCATGGTTGATGCCTGGCCTAAAGCCGAGAGATGACCTTGTAAAACTGTAATTTTGCTATCCTCCCAACGAAAGCCTTGGATTACTTGAAGGGTTTTGATTCGCAAGGAAATTGACTATGAAAGGGGAATGGTATAACTTTGGTTAGAAGGAAGAAAAGTGGTATTGTATCAAgtaaattgcttgaaaatgtcAACGAAAAGAAGCTTCTCAACTCCCTCAGCTCAAAACCAGCCAAATCCTCAAATTGACAATCAAGTTCAAGGAATGTTGAATAGAGATGATAGACATTGGAAGCATTTTCTTAGTGCTGATTCATCATCCGCATCATCAATACTTCATGTTACTGCTGATGACATAAGTGTTCCTACCATGGGATTTTTGTATGATTATTATGGCATAACTGAGGAAACACAGCATGGTCCACCTTCTCCTGGAACAAGTCCATTTTCATCtagcaatgaaaatgatgtttCACAACCAGTGTCTAATGCTTCATCACTGAGTACAAGTGAAAAGGAATCATCAGGGGAGGAAGTATCACCGCCGATCTCGACAGTTGACCATAAGAGCATTAGTTCTCCGTGTACTTGCCAGCAAACAACGGCAGGGACATCAACGTCAGTTCTTTCATCAACTGTTTCATTTGTCGAAGAGgaagaagaaaataacCGAGAGCCCGCTGTTAAAAGCGAAAGATAttcACCGACGACGCCTGACAATAGCCAAAGCAATTTGAACATGATAACGACCGGAGAAATGCAAATGCTGCTTTCAAAAGTCTCAGACAACGAAAGATTTATAAACGTTTTAGAAGCGCCTACATCAATTATACAAAAACAAGGGGAAGATTCGTTAACTTATTTAAATAAAGgtCAATTTTATGCTATTACCTGTGAGTCTCGTACACCACCAAAAGATGAGTTTCAGCTGATAAAGtcatatatttatttggtGTTTCGCGAAGAAAAGGATCCAAGAAATGAGATGAATCATTGGCATTATTGGTCGTCACAGCAGCCGAATCCCAATCAAAGAGCTTTCGATATTGACAGAAAATCTTGTCAGAATGTTGACGAGTTTATTGATGAGATCGGTTATAATGCATTTGCCTTCACTTGGAATCCATGCGAGAAAGTTAAGGTTGTCATCCGAATAAATTGCTTAAGTACGGATTTCTCACCTCAAAAAGGTGTAAAGGGAATACCGTTACATCTACAAGTCGATACTTACGAAGACATGAATCCTGAGGCAGATCCTGTGTTTAGAACGTTTTGCCAAATCAAGGTCTTCCGAGACAAGGGAGCAGAAAGGAAGAACAAAGATGAATCAAGAAGTGCAGAGAGAAGgcttctgaaatttttgaaaaatagttcAAGCCCAGGAGTAAACAGTATTGGCAGTGTATTCCAAAGCCCGAATAAAGTCACCAAATTTAATCCAGTATCACCAAAAGGACCAAAACCATGGGTGTTTGTCCCAAAGACTCAGCGGATGCGATCCAGTTTATCATCAGATGATGGGTATATTGCTCCTAACAGTAGCACGACCCCACCTAATCAGACACCACTCTTGGCATCAATAAGggctcAAGAGAGTAAAAGGCAGCTTGCTGCAGCGGTGAATGTTGCTAAGGAGGACCTAGAGGATTTGTCAATGTTGCCAAAGCAACCAAAATGCCGTGTTGTAAAACGAAAAGCGCCAGCGGTGACTATTTATGTcagaaaggaagaagaaaaggtTTACAATGCACTAAtgcttgaaaatttgacattaaaagatttgaaagagGCTATTGCGCAGAAATATGGCATGCCGccagaaatgataaaaaatatgtaCAAAAAGACCAGAAAAGgaattctAGTGAACATGGACGATATGATGGTGGAGCAATTTGTTGATGAAGACGATTTCATTATTCAAGTCAACTTTGATAATCAGCTTGGTCATTTTGAACTAACAATGCATTATTAAAGGATCCAAATGTGTATAAAACtaaactgaaaaaatgagaTAACTGTGCGGCAGTACTGGGGATTCAATGGCACTTCTTATCGCAGCTTCACATCTCCAAAACAAGAACTGAAGAAAACTGACTTTTACTAAGATTTACCTCCACCTTTTGATATGGAATAGATATTGTACAAGCCATGCTTTCTCCTTTATTGCACCCACAACCAATTATCAAAGTATCTTTGATTGGAGATGTCCTTAATGTTTGCTGGTTTTTGGGTAACGTCGTGTAGCTTTTGGGTGACTGGTAGTTTTCCAGAGAAGTTATTGCCCAGGCGATGGTGACTTGAAGTAATTACAAGGCATGTTTTTTCTTGCTAATCTTACAACCATCTGGTGGCTCAAGTTAATGGGATTTGTTgcatatttttttactttatataATCAAATATCAATAATCAAATGACCGTTGCATGTTTAGAATTGGTGCATAGTTGATAAGATGTACCCAGGAAGAATGAGATTCTTGGCTTGTTAGGTTTCTATTATGGTAACCATCTCACAGTTAAAAGTTGCCCCATTTTGACAATTGTCTGTGTGACTAATAGAGTGCTAGAATGACTGCCATATAGCCTTTAGCTGAATGATGTCTAATAAAACCTACAATTGGTACTTGTCCCATTTTCAGCTGTATAGCAAGATTTAGCACTGATTCCTGCTCAATGATAACCAACGTTTGGACAATTTGTTATGCAAACTTGTGAAACTTTGAGTTGCAATTAAATAACCCAACATTTATGGGATGGCAGTAAACGTTATAACTTcttaaagctttttttgtttgttcctTGCCAGGGCTGtagattttctttaaagatAAGGAATTTTTTCCATGTAGGAGTGTTTTATCGGCAACTTGTCCAAACTGCTGGCAACTGAATGATGGTTTGCCTATTTTGCCGGCATATCTTATGCTGGACTTGTGATGGCCCTGTTCGTTACAAAGGAAAGATTGTTTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K5C0	Grainyhead-like protein 2 homolog OS=Mus musculus OX=10090 GN=Grhl2 PE=2 SV=1
Q6ISB3	Grainyhead-like protein 2 homolog OS=Homo sapiens OX=9606 GN=GRHL2 PE=1 SV=1
Q5M7R9	Grainyhead-like protein 2 homolog OS=Xenopus tropicalis OX=8364 GN=grhl2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005111 (this species only) · gene tree & orthology
Transcription factor family	CP2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04516 all species →	CP2	CP2 transcription factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040167 all species →	Family	Transcription factor CP2-like	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR007604 all species →	Domain	CP2 transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037 all species →	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09275	TFCP2; transcription factor CP2 and related proteins	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.