Gene detail

Detailed information of ENSSJYP00000023283.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_020610141.1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like [Orbicella faveolata]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

ENSSJYT00000024345

ATGTCTGAAAAACCTGCCGAAGAAGTAGAAGAGAGTACCTCTTCACAAAGTTCAAGTGAAGATGAAGAATCTGATCACGAGAAGCCAAAGAAGAAGCCATCTTTACCTCCAATCAAGAACCCAAATTATTCATTTGGAAAAGATTATACTAAGAAAATTGAAGGAGACAAAGCAACAAGATTCCAGTATTTGTTATCACAAACTGAAATATTTGCTCACTTTTTAAATGCAGCAGGTAGGAAGCCACCTACAAGTcccttgaaaatgaagaagatgcCAGATTTTGAAAAGGCAGCTGCAGCTGCAAAAAGTGATGCTGGAGATCACAGACACAGAAGAACTGAAGCAGAAGAAGACAAAGAGTTACTTGAAGAAGGAAGACATTCTCAAACATCTGTCATCCACTTTGAATCATCTCCAGCTTACATAAAGAATGGGCAAATGAGGGATTACCAAATTCGTGGATTAAATTGGCTTATTTCTCTGTTCGAAAATGGAATCAATGGGATACTTGCCGATGAAATGgGTCTTGGAAAAACATTACAGACAATCTCGCTGTTGGGTTACATGAAACATCACAGGAATCTACCTGGGCCACATATAGTCATCTGCCCAAAGTCGACATTGACAAATTGGATGGCAGAGTTTAAGAAATGGTGTCCTACAATACGATCAGTTTGTTTGATAGGAAAACAAGAACAAAGGGCTGCTCTTATTCGAGAAACACTTCTGCCAGGTGAATGGGATGTACTGGTTACATCATATGAAATGTGTATTAGGGAAAAGGCAGTTTTGAAGAAGTTTGCTTGGAGGTATCTTGTTATAGATGAAGCTCACAGGAttaaaaatgagaaatcaaAGCTTTCTGAAATCGTGAGAGAGTTCCGCTCTGCAAACAGGCTGCTTTTGACAGGGACTccattgcaaaacaatttacATGAACTTTGGGCTTTGCTCAACTTCTTGCTGCCAGATGTATTCAGTTCCTCTGAGGACTTTGATGCCTGGTTTAACACCCAGAATCTTGTAGATGGAGCTGAAACCAAACTTGTGTCAAGATTACACTCGgTGCTACGACCTTTCTTGTTGCGAAGGTTGAAAGCAGAAGTCGAAAGAAGACTTCTACCAAAAAAGGAAGTGAAAGTTTATATTGGCCTCAGTCAAATGCAGAGACAATGGTacacaaatattttgatgaaagacATCGACATAGTGAATGGCGCTGGAAAGTCGGATAAATTGAGATTGTTGAACATTCTTATGCAGTTACGAAAATGCTGTAATCATCCATACCTCTTTGATGGCGCTGAACCCGGACCCCCATATACAACTGATCAACATCTGGTAGACAACAGTGGCAAATTGGTCGTCTTAGATAAGCTGTTGAAATACTTGAAGCAACAAGGCTCCCGTGTACTCATCTTTAGCCAGATGACACGTATGCTTGATATCCTAGAAGACTATTGCATGTGGCGGGGATACCAATACTGCAGATTGGATGGTCAGACGCCTCATGAAGACAGACAGGCACAGATCGATGCTTACAACATGCCAGACAGTGataagtttattttcatgctTAGTACACGAGCTGGAGGGCTGGGTATTAACCTCGCTACTGCCGATATCGTCATCATATATGATAGTGACTGGAATCCTCAAGTCGATTTGCAAGCTATGGACAGAGCACATCGTATTGGCCAGAAGAAGCAAGTGCGTGTATTCAGGTTTATAACAGAAAACACTGTGGAAGACCGTATCATAGAAAGAGCTGAAATGAAGCTTCGGCTTGATGCAGTTGTTATTCAACAAGGTCGTTTGGTTGACCCCACTGTTAAAGTCGGAAAGGAGGAAATGCTGACGATGATCCGCCATGGTGccaatcaaatatttgcatcAAAGGATTCCACAATTACAGACGAAGATATTCAGACGATTTTGGAAAGAGGTGAACGGAAGaCTAAAGAAATCGAAGAGAAAATGAAGAGTTTTGGAGAGTCAGCCCTGAGAAACTTTTCCATGGATGGACCATCTAGTATTTATGAATTCGAAGGAGAAAATTACAAAGACAAGGAAAAGACTGGCACTCTTGCCACGTGGATTGAGCCACCAAAACGTGAAAGAAAAGCCAATTATGCGGTCGATGCTTACTTCAAAGAAATGCTTCGTATCAGCGACGCTCCGAAGGCGCCCAAGGCCCCAAGACCACCAAGACAGCCTAATGTGCAAGATTTCCAATTCTTTCCACCAAGATTATTTGAGTTGcttgataaagaaatatacGCTTTCCGAAAGAGTGTAGGCTACAAGGTTCCTAAAGATTTAGATTTGCCGGACGCTGCTGCCAAGTccaaacaaaaagaagaacaaaGGCGTGTAGACGAAGCTGAACCTCTCaatgaagaagaaattaaGGAAAAAGAAGAGCTCCTTACCGAGGGATTCACGAACTGGTCAAAAAGGGATTTCAACCAGTTTATTAAGGCTTGTGAAAAGTATGGTAGAGATGACACTGATAACATTTGCAAGGATGTTGAGGGAAAGACACCAGAAGAGGTTCGTGCTTATGCAGCTGTATTTTGGGAAAGATGCAATGAACTAACTGATATTGACCGCATTATGGGACAAATTGAACGTGGTGAGGCGAAAATTCAAAGGAGAATCAGCATCAAAGAAGCAATGGATGCAAAGATGGCCAGATACAAATCACCATTCCATCAAATGCGAATCCAGTACGGTACAAACAAAGGGAAGAACTACACGGAAGAAGAAGATCGCTTTTTGATCTGCATGCTTCACAAGCTTGGTTTTGACAAAGAGAACGTTTACGAGGAGCTAAGACAAGCTGTTAGAAGTGCTCCGCAATTTAGGTTCGACTGGTTCATCAAATCAAGGACTGCCGTGGAACTGCAGCGGCGTTGCAATACTCTTATAACACTGATTGAAAGGGAGAATCAAGAACtggaagagaaagaaaaacaagaaaaaaggaagCGTGGCCCTAAACCAGGCCTGCCTAAAggtccaaatattaaaagaaaagctGATGGTACTCCTGACGGACGCGGAAGaccaaagaagaagaagaattaa

Transcript

ENSSJYT00000024345

CCAGAAGGCGCGCGAGATTGCCATAAAGACTTGGTAATTGtcaaataaaacaaggaaTATGTCTGAAAAACCTGCCGAAGAAGTAGAAGAGAGTACCTCTTCACAAAGTTCAAGTGAAGATGAAGAATCTGATCACGAGAAGCCAAAGAAGAAGCCATCTTTACCTCCAATCAAGAACCCAAATTATTCATTTGGAAAAGATTATACTAAGAAAATTGAAGGAGACAAAGCAACAAGATTCCAGTATTTGTTATCACAAACTGAAATATTTGCTCACTTTTTAAATGCAGCAGGTAGGAAGCCACCTACAAGTcccttgaaaatgaagaagatgcCAGATTTTGAAAAGGCAGCTGCAGCTGCAAAAAGTGATGCTGGAGATCACAGACACAGAAGAACTGAAGCAGAAGAAGACAAAGAGTTACTTGAAGAAGGAAGACATTCTCAAACATCTGTCATCCACTTTGAATCATCTCCAGCTTACATAAAGAATGGGCAAATGAGGGATTACCAAATTCGTGGATTAAATTGGCTTATTTCTCTGTTCGAAAATGGAATCAATGGGATACTTGCCGATGAAATGgGTCTTGGAAAAACATTACAGACAATCTCGCTGTTGGGTTACATGAAACATCACAGGAATCTACCTGGGCCACATATAGTCATCTGCCCAAAGTCGACATTGACAAATTGGATGGCAGAGTTTAAGAAATGGTGTCCTACAATACGATCAGTTTGTTTGATAGGAAAACAAGAACAAAGGGCTGCTCTTATTCGAGAAACACTTCTGCCAGGTGAATGGGATGTACTGGTTACATCATATGAAATGTGTATTAGGGAAAAGGCAGTTTTGAAGAAGTTTGCTTGGAGGTATCTTGTTATAGATGAAGCTCACAGGAttaaaaatgagaaatcaaAGCTTTCTGAAATCGTGAGAGAGTTCCGCTCTGCAAACAGGCTGCTTTTGACAGGGACTccattgcaaaacaatttacATGAACTTTGGGCTTTGCTCAACTTCTTGCTGCCAGATGTATTCAGTTCCTCTGAGGACTTTGATGCCTGGTTTAACACCCAGAATCTTGTAGATGGAGCTGAAACCAAACTTGTGTCAAGATTACACTCGgTGCTACGACCTTTCTTGTTGCGAAGGTTGAAAGCAGAAGTCGAAAGAAGACTTCTACCAAAAAAGGAAGTGAAAGTTTATATTGGCCTCAGTCAAATGCAGAGACAATGGTacacaaatattttgatgaaagacATCGACATAGTGAATGGCGCTGGAAAGTCGGATAAATTGAGATTGTTGAACATTCTTATGCAGTTACGAAAATGCTGTAATCATCCATACCTCTTTGATGGCGCTGAACCCGGACCCCCATATACAACTGATCAACATCTGGTAGACAACAGTGGCAAATTGGTCGTCTTAGATAAGCTGTTGAAATACTTGAAGCAACAAGGCTCCCGTGTACTCATCTTTAGCCAGATGACACGTATGCTTGATATCCTAGAAGACTATTGCATGTGGCGGGGATACCAATACTGCAGATTGGATGGTCAGACGCCTCATGAAGACAGACAGGCACAGATCGATGCTTACAACATGCCAGACAGTGataagtttattttcatgctTAGTACACGAGCTGGAGGGCTGGGTATTAACCTCGCTACTGCCGATATCGTCATCATATATGATAGTGACTGGAATCCTCAAGTCGATTTGCAAGCTATGGACAGAGCACATCGTATTGGCCAGAAGAAGCAAGTGCGTGTATTCAGGTTTATAACAGAAAACACTGTGGAAGACCGTATCATAGAAAGAGCTGAAATGAAGCTTCGGCTTGATGCAGTTGTTATTCAACAAGGTCGTTTGGTTGACCCCACTGTTAAAGTCGGAAAGGAGGAAATGCTGACGATGATCCGCCATGGTGccaatcaaatatttgcatcAAAGGATTCCACAATTACAGACGAAGATATTCAGACGATTTTGGAAAGAGGTGAACGGAAGaCTAAAGAAATCGAAGAGAAAATGAAGAGTTTTGGAGAGTCAGCCCTGAGAAACTTTTCCATGGATGGACCATCTAGTATTTATGAATTCGAAGGAGAAAATTACAAAGACAAGGAAAAGACTGGCACTCTTGCCACGTGGATTGAGCCACCAAAACGTGAAAGAAAAGCCAATTATGCGGTCGATGCTTACTTCAAAGAAATGCTTCGTATCAGCGACGCTCCGAAGGCGCCCAAGGCCCCAAGACCACCAAGACAGCCTAATGTGCAAGATTTCCAATTCTTTCCACCAAGATTATTTGAGTTGcttgataaagaaatatacGCTTTCCGAAAGAGTGTAGGCTACAAGGTTCCTAAAGATTTAGATTTGCCGGACGCTGCTGCCAAGTccaaacaaaaagaagaacaaaGGCGTGTAGACGAAGCTGAACCTCTCaatgaagaagaaattaaGGAAAAAGAAGAGCTCCTTACCGAGGGATTCACGAACTGGTCAAAAAGGGATTTCAACCAGTTTATTAAGGCTTGTGAAAAGTATGGTAGAGATGACACTGATAACATTTGCAAGGATGTTGAGGGAAAGACACCAGAAGAGGTTCGTGCTTATGCAGCTGTATTTTGGGAAAGATGCAATGAACTAACTGATATTGACCGCATTATGGGACAAATTGAACGTGGTGAGGCGAAAATTCAAAGGAGAATCAGCATCAAAGAAGCAATGGATGCAAAGATGGCCAGATACAAATCACCATTCCATCAAATGCGAATCCAGTACGGTACAAACAAAGGGAAGAACTACACGGAAGAAGAAGATCGCTTTTTGATCTGCATGCTTCACAAGCTTGGTTTTGACAAAGAGAACGTTTACGAGGAGCTAAGACAAGCTGTTAGAAGTGCTCCGCAATTTAGGTTCGACTGGTTCATCAAATCAAGGACTGCCGTGGAACTGCAGCGGCGTTGCAATACTCTTATAACACTGATTGAAAGGGAGAATCAAGAACtggaagagaaagaaaaacaagaaaaaaggaagCGTGGCCCTAAACCAGGCCTGCCTAAAggtccaaatattaaaagaaaagctGATGGTACTCCTGACGGACGCGGAAGaccaaagaagaagaagaattaaTCTGAACTGAGCTTAGATAACAAAGGGCTCTTGTTTCCTTAACAGTCTCCACCTGTACATCGAATTCTCAGGTGTTCAACTTATGGCGCCTTTTAGAAATATGCTTGATTGCTGCTGTAAAAAGGGTCAGAAAATTTCTGCTGAGATTTGTAATTAAATGCTCAAGATTCcaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91ZW3	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus OX=10090 GN=Smarca5 PE=1 SV=1
O60264	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens OX=9606 GN=SMARCA5 PE=1 SV=1
P28370	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 OS=Homo sapiens OX=9606 GN=SMARCA1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000968 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09111 all species →	SLIDE	SLIDE	Domain	Interproscan
PF09110 all species →	HAND	HAND	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR044754 all species →	Domain	Isw1/2, N-terminal	Interproscan
IPR015195 all species →	Domain	SLIDE domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR015194 all species →	Domain	ISWI, HAND domain	Interproscan
IPR036306 all species →	Homologous_superfamily	ISWI, HAND domain superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0034728 all species →	Biological Process	nucleosome organization	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11654	SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.