Gene detail

Detailed information of ENSSJYP00000023519.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: CAH3039095.1, unnamed protein product [Porites lobata]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000024582

CAGGTATCTCAGTGTTCAGAAAGCAAATGGTGGAAATAAAGGAGTTCCTTATACAGAGACAAAATGGAGTTGAAATTTAACAGATTCGTGGTGCTTTTTATAACCATGTCTCAACTTGGTATCTTGCCTTTGTTcgcattttcaaatgataatatTAAATTTGTTTCTGCGCTTCTAAACGCCTCGTACAAAGAGATGGACAATGccaaacaaattcaaatatgGAGGCACTTGACAGACCAAGGAATTTATGGAACTGGCGCTGAAAGAAGAGCTGCTGAAGGTTATatttattatgaaaaagacaacGATTGGTGTGAGCCAGTTATTCCCAAAATCCCTAGCAGTTACAAGACGTGGATAGCCCTAATTGAACGAGGAAATTGCGAGTTCGTCACTAAAATATTGCACGCCAAGAGGGTGAATGCTTCAGCTGTTATAATTTTCGATAATGATTCTAGCGGCACACGCTTGGATGATTCGCCAATGAGATGCTATGGCGTTGGAAGCATTGTAGCCGTTTCTATTTCGAAGGAACTTGGTATAAAACTAGCCTCGATATTTGAGTACTCTTTGATTCATATGCACATATCGATAGGACGGTATCATTACAGTCGGGAAAGGTACAGAGGAGCTGGAAATACATCCGTCCTTTTCGTTTTGGTTTCGTTCATTCTGCTTATGTGCATTTCTTTAGCCTGGCTCGTCTTTTACTATGTCCAAAAATTCCGTTATTCTTATGCTAGAGACAAAAAAGAGAAGCAATTGATCAATGCCGCAAAGAAGGCAATCGCCAAGCTAAAAACGAGGACTTGTGATGTTGATTGTAATGAGGCTCAAGATGATACTTGTGCAGTCTGCCTTGAAGGTTACGACAAAGGAGAAACATTGAGAGTTTTGACATGCAGACATGAGTTTCATAAGGCCTGTGTGGACCCTTGGCTGTTGGAGCACAGAACATGTCCAATATGTAAATCAAATATCCTCAAAGCCTTTGGAATTCATGTTCCAGATACACCATCATCTGAGAGAGACCTTGAAGAATCAATAGCCCCAACACCACAACAATTGGTAATTTTAATGGAAGTCCATGATATACCACAGGAAGCTGAAAATGTCCCCTCAAGTGATAACTTGCACTGTGATACTGATAGAGAAGCCCAATCAGTTGGGAGCTCGAAAAAGGCAGATGATGAAGACAGTTTGACAAATTCAACATCAGTACTTGTCAATCAGCAATATGCTTAGGGTATGGCAGGAGGCAAGGAAAATTTTGTACAATCAGTGTTTAGTTTGTTGGTAATTGGCTCACATGGTCTTAATATTCGGTAGAGTAATTGATTTAATCGATCCAACATAATTAAACTCACCAAATACTAGATTTCTGTAATATTATGCAGTTACCGGATTACATTCAGCAACAGAAGACTTCTAATCAAGATATGACAGTAGTATCATGAGATTAAGTTGCAATTTGTCAGTTTGATACAGATTAAGGTGCCAAAAATCCAGATACGTTTCAGGCCTTGCCATGAGTAAAATCAAGGTGCTTTTAAAATGGAGCTATTGCATAATATAGGCTCAGGTTCATACCGctacttaaaatttttttaaagtacagaagGGGCTTTTTATAGGAATATTACACGGGGAGTGCAATCGAGGAACACTTTTACTGTTTTATGTTACCATAGCTTCATTTCCatgatggaaaaattgcaagaagCAGATAACTGGCTATCAGGCTGGTAACTAGTTAATTTTATAGCTCTACTTTGATTTTACTGCGGAAAACGGGTTGTCGCTACTCTGAGGATACCTGAAAACTCCTTGAAATAACGATTTCTACTGCATACTGCATCCCGTGTTGTTTATCGATAAGCTTGACGTTTATATGAATCATGATATGTTGTAGTCACATCAGAGAGGTGATTTCAAGGAAGTCGCTAGTGATGACTTGAAAGATTTTTCCTTCAGCCATATAATACGAAATTCAGTTATTGGGTGCTCGATAAATCGCGCTTGTGGCTTAGTTTTAGGCGCTCGCACTCGATCGATTGCCTCCCTGGGCAAGGCCTGCACGTTTGTAAGCTCTAAATGGTTTTGATACAAACAACGAAACTCTGATGggtttattatttgattttaagccATATAACAATTTCCAGGGTTGTTTTAAGCTGGTTGAGGCTCCTTAACCCCCTTTTATGTGTGTAAGGAGGGAGAAAAATAGAGATTTCATATCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q566M8	RING finger protein 150 OS=Danio rerio OX=7955 GN=rnf150 PE=2 SV=1
Q9ULK6	RING finger protein 150 OS=Homo sapiens OX=9606 GN=RNF150 PE=1 SV=2
Q5DTZ6	RING finger protein 150 OS=Mus musculus OX=10090 GN=Rnf150 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007045 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF02225 all species →	PA	PA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR051073 all species →	Family	ZNRF3/Arkadia E3 ubiquitin-protein ligases	Interproscan
IPR046450 all species →	Homologous_superfamily	PA domain superfamily	Interproscan
IPR003137 all species →	Domain	PA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16200 all species →	RING ZINC FINGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0038018 all species →	Biological Process	Wnt receptor catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15692	RNF13, RZF; E3 ubiquitin-protein ligase RNF13	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.