Genomic Location: chr3:5456885...5463531
NR annotation: XP_019645860.1, PREDICTED: uncharacterized protein LOC109486471 [Branchiostoma belcheri]
Species Catostylus mosaicus · all data for this species · gene families
| CDS |
| ENSSJYT00000024585 |
| Transcript |
| ENSSJYT00000024585 |
| Protein |
| ENSSJYP00000023522.1 |
| UniProt accession | Description |
|---|---|
| P13154 | Leucine dehydrogenase OS=Geobacillus stearothermophilus OX=1422 GN=ldh PE=1 SV=3 |
| Q53560 | Leucine dehydrogenase OS=Bacillus licheniformis OX=1402 GN=ldh PE=1 SV=1 |
| P54531 | Leucine dehydrogenase OS=Bacillus subtilis (strain 168) OX=224308 GN=yqiT PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012715 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00208 all species → | ELFV_dehydrog | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006096 all species → | Domain | Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR016211 all species → | Family | Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, bacterial/archaeal | Interproscan |
| IPR006095 all species → | Family | Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42722 all species → | LEUCINE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006520 all species → | Biological Process | amino acid metabolic process | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016639 all species → | Molecular Function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13479 | ygeT, xdhB; xanthine dehydrogenase FAD-binding subunit | EC:1.17.1.4 | Purine metabolism | ko00230 | deepkoala |
Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
