Gene detail

Detailed information of ENSSJYP00000023726.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: AAG25994.1, integrin beta chain [Podocoryna carnea]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

ENSSJYT00000024790

ATGATGTATGCACCTTCTGTGTTTCTGCTTCTGGTGAGCCTTAGTTTGATTGAATgtCAAGAATCAGTTTTTGATTGCACCCAACAATCATCATGTCAGACATGTATTCAAAAAGGTCCGAAGTGTGCTTGGTGTAAAGATGAGAGTTATAAAGATTTGAATGTGAAAGATAAAGACAAACCAATTTACTATCCTCGATGTGACTTTCTAAGAAACCATAAAACAAGAGGTTGCAAGGGAATTGCTGACCCGCCATCAAATTATTCAGTTAATGAGGGAAATGTAGCAATTGGTGGTGAAAACAGAGTGTTCCCTCAAAATATCACTCTAAACCTTAGGCCAGGTAGACCAACGACGGTGAATGTTCGTGTGAAAACGCCAAAAAACTTTCCGGTTGATTTGTATTACCTCATGGATTTGTCAGCAACTATGAAAGCCAGTTTAAAAGAAATCAGAAATCTTGGATCAAGGCTGAGCACGGAGTTGAAtaacatcacatcaaattttCGACTTGGATTTGGTGGATTTGTCGACAAAAATCTGGGACCATACACAAAGACAAATAAAGCCGAAGTTCAGCAAATTCTAAATAAAGGCACACAGGGAACCTTTTCTTATCGAAATTATTTACCACTAAACGTGAATACAAGCAAGTTCCAGGAAGTTGTCACGAAAACAAGAATTTCGCATAATGTTGATCTTCCTGAGGGTACATTGGATGCATTGATGCAAGTTGTAGCATGTGATCAGGAAATTGGTTGGAGAGAcaaaaagaaagcaagaagAATTATCATTGTGACGACAGATGGATTATTTCATTACTCTGGAGATGGTCTCCTTGGTGGTGTAGTTTTGCCAAATGATGGAAAATGTCATATGCTGAACGGTGATTATGCAGCTGCTACTAAATTTGATTATCCATCGCTGTCATATCTTCGTAAACGCATGTTAGAAGCGGAAATAGtaccaatttttgcaacaacgGGAAATCTCGAACTATATACTAGAGTGCAAGATTTTTTTGGTCAGGCATCAGGTGCAGTTGCAGCCAGACTTGAAAAGGATTCTGTTAACATTGTACCACTCGTTCGAGAAGCATACGAGaaaatcTCTAGAACAGTCAAAGTCAGCACTCAGAAAGTTAACGGCATCAACGTCAAATTGAAGGCAAAGTGTGGTGATACCAAGCCATGGGAAGACAAGGAAGGATGCACGGGAGTGGAATTTGGAGAAGAGgttCAATTTAATGTTTCACTGGAAGCAACAGAGTGTAGTAAACAACTCCAAGAAGTCAAAGGATTTCGGATCAGAACAAGTTTTGATGACGTGTTCGTTAATCTCAAGTTGGTTTGCAATTGCGAATGTGATAATCCAATTTACATCATGAAAAATAGCTCTAGATGCAATTATAAAGGATCTTTGAGGTGTGGAAGATGCACATGTGATGGGGATTACAAAGGTCGTTTCTGTCAATGCGATGCAACCACCAATCAAGATGATACGTCATGCAGGCTGGATGGAAAAGTTTGCAGCAATAGAGGAGATTGTGAATGTGGTGAATGTGTGAAATGTTTCCCAAGTCAGAATCCTATCGAGTATATTTATGGAAGATATTGCGAATGTAGCAACGCTTCTTGTCCAAGATCGTTTGGGCAGATATGCGGAGgtAAGGAAAGAGGGTCTTGCCAGTGCAATAAATGTGAATGTGAACCAAATTGGACTGGACCATCATGTGGTGATGAATGTATCAATTCTACGGCTGGCTGTATTTTCGCAAGAAACAATAAAATCTGCAACGATAAAGGATCATGCATTTGTGGTCGATGCAATAATTGTGCCCAAGGATACTTTGGTGAATTTTGTGATCAATGCGCTGAGaaTTGCCCTGATCCGTGTGTGGACTACAAAGAGTGCGTCAGatgcaaggtttttaaaacAAGCGATCTTGGTTCATCAGCATGTGAACAAGAATGCGCAAGACGAAACATCACCAAGATAACAACAGTGGATTATGTTACAGCAGgTGCCAGGGAACGCTGCGTTGCAGCAGACAAAGACGATTGCTCCTTCGTGTTTACATTCAGAACAAACAATGTCACAGAAGAAGTTGAGCTTTTGGTTCAGAAAGAGAGAATTTGCCCTGCTGAGCCTGATATTTTGGCAATAATTCTGGGTGTGATTGCTGGCATTGTTGGTGTTGGCTTGGCTCTTTTACTTATTTGGAAGTTGCTCGCTACTCTGCAgGATCGTCGTGAATTAGCCAAATTTAACAAAGATTTACAAGAAGTTAAATTCGATACGggTGAGAATCCACTGTACAAGCAAGCCACGTCTACGTTTAAAAACCCAATTTATGAAGGACACTCGTAA

Transcript

ENSSJYT00000024790

CAGCTTTGCTCGAACGGGCGTGTGGTGTGATGCAAAGCCTGTTTTGTATTCATTTCTCTTTCTTAGGCtgaatttttattgcagaCGATTTCAACAAGAATCTGCCTTGCACCAAGCGTTTTAAACCAGCCGATCGTAGTTTAAATGTTTTCAGAATGATGTATGCACCTTCTGTGTTTCTGCTTCTGGTGAGCCTTAGTTTGATTGAATgtCAAGAATCAGTTTTTGATTGCACCCAACAATCATCATGTCAGACATGTATTCAAAAAGGTCCGAAGTGTGCTTGGTGTAAAGATGAGAGTTATAAAGATTTGAATGTGAAAGATAAAGACAAACCAATTTACTATCCTCGATGTGACTTTCTAAGAAACCATAAAACAAGAGGTTGCAAGGGAATTGCTGACCCGCCATCAAATTATTCAGTTAATGAGGGAAATGTAGCAATTGGTGGTGAAAACAGAGTGTTCCCTCAAAATATCACTCTAAACCTTAGGCCAGGTAGACCAACGACGGTGAATGTTCGTGTGAAAACGCCAAAAAACTTTCCGGTTGATTTGTATTACCTCATGGATTTGTCAGCAACTATGAAAGCCAGTTTAAAAGAAATCAGAAATCTTGGATCAAGGCTGAGCACGGAGTTGAAtaacatcacatcaaattttCGACTTGGATTTGGTGGATTTGTCGACAAAAATCTGGGACCATACACAAAGACAAATAAAGCCGAAGTTCAGCAAATTCTAAATAAAGGCACACAGGGAACCTTTTCTTATCGAAATTATTTACCACTAAACGTGAATACAAGCAAGTTCCAGGAAGTTGTCACGAAAACAAGAATTTCGCATAATGTTGATCTTCCTGAGGGTACATTGGATGCATTGATGCAAGTTGTAGCATGTGATCAGGAAATTGGTTGGAGAGAcaaaaagaaagcaagaagAATTATCATTGTGACGACAGATGGATTATTTCATTACTCTGGAGATGGTCTCCTTGGTGGTGTAGTTTTGCCAAATGATGGAAAATGTCATATGCTGAACGGTGATTATGCAGCTGCTACTAAATTTGATTATCCATCGCTGTCATATCTTCGTAAACGCATGTTAGAAGCGGAAATAGtaccaatttttgcaacaacgGGAAATCTCGAACTATATACTAGAGTGCAAGATTTTTTTGGTCAGGCATCAGGTGCAGTTGCAGCCAGACTTGAAAAGGATTCTGTTAACATTGTACCACTCGTTCGAGAAGCATACGAGaaaatcTCTAGAACAGTCAAAGTCAGCACTCAGAAAGTTAACGGCATCAACGTCAAATTGAAGGCAAAGTGTGGTGATACCAAGCCATGGGAAGACAAGGAAGGATGCACGGGAGTGGAATTTGGAGAAGAGgttCAATTTAATGTTTCACTGGAAGCAACAGAGTGTAGTAAACAACTCCAAGAAGTCAAAGGATTTCGGATCAGAACAAGTTTTGATGACGTGTTCGTTAATCTCAAGTTGGTTTGCAATTGCGAATGTGATAATCCAATTTACATCATGAAAAATAGCTCTAGATGCAATTATAAAGGATCTTTGAGGTGTGGAAGATGCACATGTGATGGGGATTACAAAGGTCGTTTCTGTCAATGCGATGCAACCACCAATCAAGATGATACGTCATGCAGGCTGGATGGAAAAGTTTGCAGCAATAGAGGAGATTGTGAATGTGGTGAATGTGTGAAATGTTTCCCAAGTCAGAATCCTATCGAGTATATTTATGGAAGATATTGCGAATGTAGCAACGCTTCTTGTCCAAGATCGTTTGGGCAGATATGCGGAGgtAAGGAAAGAGGGTCTTGCCAGTGCAATAAATGTGAATGTGAACCAAATTGGACTGGACCATCATGTGGTGATGAATGTATCAATTCTACGGCTGGCTGTATTTTCGCAAGAAACAATAAAATCTGCAACGATAAAGGATCATGCATTTGTGGTCGATGCAATAATTGTGCCCAAGGATACTTTGGTGAATTTTGTGATCAATGCGCTGAGaaTTGCCCTGATCCGTGTGTGGACTACAAAGAGTGCGTCAGatgcaaggtttttaaaacAAGCGATCTTGGTTCATCAGCATGTGAACAAGAATGCGCAAGACGAAACATCACCAAGATAACAACAGTGGATTATGTTACAGCAGgTGCCAGGGAACGCTGCGTTGCAGCAGACAAAGACGATTGCTCCTTCGTGTTTACATTCAGAACAAACAATGTCACAGAAGAAGTTGAGCTTTTGGTTCAGAAAGAGAGAATTTGCCCTGCTGAGCCTGATATTTTGGCAATAATTCTGGGTGTGATTGCTGGCATTGTTGGTGTTGGCTTGGCTCTTTTACTTATTTGGAAGTTGCTCGCTACTCTGCAgGATCGTCGTGAATTAGCCAAATTTAACAAAGATTTACAAGAAGTTAAATTCGATACGggTGAGAATCCACTGTACAAGCAAGCCACGTCTACGTTTAAAAACCCAATTTATGAAGGACACTCGTAATGGTTGAACTAGAAGAAATGAATGTTTGTCAGTATGGCGATGCAAAAGACGTGTTTGGAACTAGTAATATTAATGAATTTGGCGATAAAATGGGAAGCCATTGTGTcagattaaaatcatatagCCCTATCGACACAAATGGTAAATTTTATTGATACCAGAACGAATATCAAACGATATTTGTGAGCAAAACTGCAGTAGCCTTGCCCATCACACAGATAAGGACTTTTTCGGTAGCCAATTTTACCTGCTAAAATTCTACAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07228	Integrin beta-1 OS=Gallus gallus OX=9031 GN=ITGB1 PE=1 SV=1
P12606	Integrin beta-1-A OS=Xenopus laevis OX=8355 GN=itgb1-a PE=2 SV=1
P12607	Integrin beta-1-B OS=Xenopus laevis OX=8355 GN=itgb1-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000809 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17205 all species →	PSI_integrin	Integrin plexin domain	Domain	Interproscan
PF08725 all species →	Integrin_b_cyt	Integrin beta cytoplasmic domain	Domain	Interproscan
PF07965 all species →	Integrin_B_tail	Integrin beta tail domain	Domain	Interproscan
PF00362 all species →	Integrin_beta	Integrin beta chain VWA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014836 all species →	Domain	Integrin beta subunit, cytoplasmic domain	Interproscan
IPR015812 all species →	Family	Integrin beta subunit	Interproscan
IPR033760 all species →	Domain	Integrin beta N-terminal	Interproscan
IPR012896 all species →	Domain	Integrin beta subunit, tail	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR036349 all species →	Homologous_superfamily	Integrin beta tail domain superfamily	Interproscan
IPR002369 all species →	Domain	Integrin beta subunit, VWA domain	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR032695 all species →	Homologous_superfamily	Integrin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10082 all species →	INTEGRIN BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0008305 all species →	Cellular Component	integrin complex	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0033627 all species →	Biological Process	cell adhesion mediated by integrin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000023726.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.