Gene detail

Detailed information of ENSSJYP00000024438.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_048589751.1, rho guanine nucleotide exchange factor 17 isoform X3 [Nematostella vectensis]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

ENSSJYT00000025558

ATGGGTAATGGATGGAgctttctaaaaaaaattggaattaaCATTAGCGGAACACTAATGAATTGCTACACACCTACTTTTGTAAGAAAGcttaaaactttaaattttcatgatattgAGTTCCTTTTTGGCCAGCAGAAACCAGGCCTAAGTTATTATAGCTGTAATAAAACTCCTTGCAGTTTGttttatcattctttttttaCGCAGGATATGCGAAGACATGTccttcaaaatcttttggaCACAGAAAATTCCTATGTGCAGAATCTCAAATTTCTCGAAACGGTTTATTACAAGCCATTGAAAAAGACAGAAGGAGGAACGGTAATTGAAAGTGGACAAGtcgatgaaatatttttccaaatacCAGAAATTTTACTGAATCATGAGTACTTCTTGGAACAGTTAAACAGCAGGGCAAAGAACTGGTCGGATAGGCAGATCATTGGCGATATTTTTGTTTCGTCGTTCACAAAGTGTTTGTTGATGGATGCATACAGCTCCTTTATTAACAACTATTTACAAGCAAGAGCAACTGTGCGAACGGCTTCATTGCGGCctgcttttgcaaaattcttgGAGCAACGGTGCAAAGAGCATAAAGAAAAGCTGACATTGCAAGATTTGCTTATACAGCCAGTTCAAAGGATCCCTCGTTATGTTCTCATTCTAAAGGACTTGTTGAAACACACAACTGCAGATCACCCTGATTATGGACAAGTGCAACTTGCGCTGGAAGAAATCAAAACACTTGCAGAAAGAATGAACAAAGGAGAAATGGAAGCAGATCAAGCTGAGATAGAGGCCGAGAAAATCCGCGATGTCGAGGCTACCATAGAGGGAGTGTCAGACCTCGTTACGGCAAACCGAAAATATTTAAGACAAGACTTAGCAGCTGAGATTAAAGGTGTTATCACGAAAAAGGATCGcatcttgtttcttttctctGATCTACTAATCTGCGCAACTGTCAGGAAGAGAACGAACACATTACGGAGAGGATCCCTCGGATTTCCTGCCCgttgtattttcattcaatcatctttttatctgttttctTTATTAACAATGTCTGTTTTTTCATTACAGAACTTAGACATGTCAGTGCGGGAGCTTCTATCAGATTTGGAAAGACAAGTCTCCGAAACGAACACAATGGCTAAAATTGAGCTACAAGTGCAGACAGAgGAAGGACCTGAAAGCTATGTATTCGTGCTTTTGTCGACGGACGTGAGATCATCTTGGGAGGCTGTTTATGAAGATGCAAAGCAAAAGCTCGCCTACGCAACGCACTCATTTCCTCCTGAATTTCAATACTCCCTTCCTGTTGACAAAAAGAGAAGTGGCATGCAGTTCACGTGTGCAGCTCCAAGTCGATTGGCAAGCACAGGAGATGTTGCGGATACAACAGGTGGAGATATTTGGGTATGCAATAGTGATGGATATGTTGGTCATTTTTGTCTCGTTTCAATGGTTCCAGAGtCGCGGCCATGCGTCACGGTGTGCTCATCGAGAATACAATGTATCGCGCCAGTTCCTGGCTCGAAACTAATATCAACAAATAAACCACGAAGTACAGATCCACGAAAACTCCACAGCATAAATGAGGTAGATTTAATAGGTTCTCATCCAATccttgattgtttttttacaGATGGTCCAACAGTATTTGGTGGGAGAATGAGCCCGGATGGAAGCAGCCTAGGAACAGTTGAAAGCGTAGAGGGAATCGAATGCAGCAGTAGCGATGAGCAATCTTACCATTCCGGCAACGAATCCAGCGATGGGGAGGACCAAAGAATAGACCGACGAATTGGCatgcaaattgaaaacagCGTACGCAAGGGGAATCaaggattttctcaaaaaggcgAGCTGGATGAATTCCTATCTGCTGATTTAGATGAAAATCCTACAATGTGGTTGGGAACTCAAGACGGATATTCTTTTGTTACCTTCTTTTTGAAACGTTTCAACAGgtatcaagaaaataaagtgTTTGTTGCCCTTGCAAGTGGAGAACTTCGCGTTTACAAAAGAGATCAAGgAAATGGCTGGGAAGTAACATCACCGCAGTCTATACAAATTGGTCGCAGCGGGGCATCAATAACATGCATCGCAGCTGCCGCAGGTCGAATTTGGTGTGGATGTCAAAATAATGTTGTACTCGTTAATGCATCGACGCTGAAAATAGAGTCAACAATCGTGGTAAGCCAGGACTCGCATCGTTCGGTATACCTCATTGTTAGCTCCGGTCTTGGCGTTTGGATATCATTGCAAAGCAGTGCAGTAGTTCGACTATACCATGCAACTTCGTTTGAAAACCTCGCTGATATTGATGTAGCACCAGCAGTCCACAAGATGCTTGCAGGTGCTGATGCAATTATACGTCAACATAAAGCTGCTTGTCTAAGGATAACTGCATTACTAGCTTGCAAGGACCTTTTATGGATTGGAACAAGTGCTGGTGTTATATTGACTAACCCACTGCCCGCTATTAAAGTTAATACGGTATCGTTACGAAACGCGCCCGGACCGACAGGATCACCACACGGGCATACGGGTCATGTACGGTTTTTAACTACAGTTGAGGTCCCAAAATCACAGTTTAAAGAGAAAGCATCGCTATCACCGGAAATTAACTCGAACAGAGCCACTTCCCCTTCGCCGTCAAGGACGAAAAAAGTCGTGGAAACCGTTCCTCGCAGCGACGATTCTTCTAAAAATGTTACTTTAGTTATAAGTGGTGGAGACGGTTACGAAGATTTTCGTACAAGTGCTACATCGGAATCGGTAGGAAGGGACGACAGCACGAACCATTTGTTAATATGGCGAgtatga

Transcript

ENSSJYT00000025558

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80U35	Rho guanine nucleotide exchange factor 17 OS=Mus musculus OX=10090 GN=Arhgef17 PE=1 SV=2
Q96PE2	Rho guanine nucleotide exchange factor 17 OS=Homo sapiens OX=9606 GN=ARHGEF17 PE=1 SV=1
Q21653	Rho guanine nucleotide exchange factor osg-1 OS=Caenorhabditis elegans OX=6239 GN=osg-1 PE=2 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003382 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19057 all species →	PH_19	PH domain	Domain	Interproscan
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR039919 all species →	Family	Rho guanine nucleotide exchange factor 10/17	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12877 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20689	ARHGEF17; Rho guanine nucleotide exchange factor 17	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.