Detailed information of ENSSJYP00000024615.1 in Catostylus mosaicus

Genomic Location: chr3:7649627...7652262
NR annotation: OUW38505.1, glutamate dehydrogenase [Flavobacteriaceae bacterium TMED184]
Species Catostylus mosaicus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P28724NADP-specific glutamate dehydrogenase OS=Giardia intestinalis OX=5741 PE=2 SV=1
P43793NADP-specific glutamate dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=gdhA PE=3 SV=1
P31026NADP-specific glutamate dehydrogenase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534) OX=196627 GN=gdh PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002528 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00208
all species →
ELFV_dehydrogGlutamate/Leucine/Phenylalanine/Valine dehydrogenaseDomainInterproscan
PF02812
all species →
ELFV_dehydrog_NGlu/Leu/Phe/Val dehydrogenase, dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006096
all species →
DomainGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminalInterproscan
IPR046346
all species →
Homologous_superfamilyAminoacid dehydrogenase-like, N-terminal domain superfamilyInterproscan
IPR006097
all species →
DomainGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domainInterproscan
IPR033524
all species →
Active_siteLeu/Phe/Val dehydrogenases active siteInterproscan
IPR050724
all species →
FamilyGlutamate/Leucine/Phenylalanine/Valine dehydrogenasesInterproscan
IPR036291
all species →
Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR006095
all species →
FamilyGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43571
all species →
NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006520
all species →
Biological Processamino acid metabolic processInterproscan
GO:0016491
all species →
Molecular Functionoxidoreductase activityInterproscan
GO:0004354
all species →
Molecular Functionglutamate dehydrogenase (NADP+) activityInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0006537
all species →
Biological Processglutamate biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSSJYP00000024615.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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