Gene detail

Detailed information of ENSSJYP00000024628.1 in Catostylus mosaicus

Genomic Location: chr3:11004113...11029490
NR annotation: XP_047126017.1, latent-transforming growth factor beta-binding protein 1-like [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSJYT00000025749

AACGTCGAATAAATCATTGGACAGAACTGGCCAGTTGCAGCAGTCGTCGATATTTCTTACAGCGACTGGAGAGGCAACAGATTGCAGCTAATAACGCGGTAGAGAAGATAAAACTGttcaaaatgttgatttaTTTAACAATTGTGGTTGTCCTGGTTGGATCATCGTCAGGATCAATCATTAACTGTTGTCATCAAGGGCAATCGGTTGGCAACCGGCAGATAAAAGGTCCACATTGCGTAGAGAAGAATATTGATTACGACGTGGTTGGCAGGGTAAGCAGAGGAATGTGCAAAGCAGTTTTCTTATCATGTTGTCAAAGCTCTGCCATGGATCAATATTGCAAGCTTGGGGTCCAAGCTGCCATaaatgggGCAAAATGCAGCAATGCCTCAGGCTTGGGAGGTGATATGAAGTCAACTTGTTGCGTCTGTTGCAAAAATGGAATTGATGCAGCAAATCGTGGAGAGAGTTGCAACAGTGGGAAGAAAGGAGAAATGTTATGCGAAGATTCATTCAATGCATGTTGTACAAACTCTAAGACAAGCATTGTAACTACAAAGGTTCCAAAAGTTACTACTCCTGCAAAAGTATTGAACTGTAAAGACCATGGATGCGAGCAGAGTTGTAGTGAAGTGGACGGTGACGTCAAATGTGAATGTAACGCTGGCTACAGCCTTAAGGTGGATGGAAAATCATGTGAAGATATTGACGAATGTTCCGAAGGATTAGCTGCTTGTGGCGACGGAGACCTTTGCCAGAATCAGGCAGGTGCTTATGTATGTGTAAAACAGCCAGCAATCAAAGAAAAGCCATGCTCCAAGGAAGGTTATATCCGCAATAGTGATGGAAAATGTGTTGATGAGGATGAGTGTGCTGCCGGAACAGCCATTTGCAGAGCTGATCAATATTGCATTAATACTGACGGCTTTTATGCTTGCTTCAGAAACTGTCCCTATGGCTACCGGACATTTGGACGCAGATGTGTCGATGTTGATGAATGTGCACTATACAAGCCCTGTCAGCTTCACTACAAATGTATCAACAAGAAAGGTCACTATGCATGTGTACGTGTTTCATGTCCAAGAGGATACCaacttaaaaatgaaagatgtGAAGATGTTGATGAATGTGCAAGTGGGATACACAAATGTACCGAAAGATACACTTGCCAAAATACAGTAGGCTTCTACAAGTGTAAACTGTCTTCTTGTGCCAGAGGTTTCAAGCTAGCTGCCGGAAGATGTATAGATATCAACGAATGCCAGGAGTTCACAAATGTTTGTGGACCTGGCCGATGTTATAATTCTTATGGTGGATACAATTGTGTCTGCTACCCGGGATaccaattcaattcaacattGTCTAAATGTGAAGATGTCGATGAATGCACGAGAAGTCCAGGAATTTGCGAGTCTGGTTGTATGAACACTCAAGGCTCGTACAGATGCATATGCCCACAGGGATATCAGTCGTTTGGAAACAACTGTGAAGACATTGACGAATGTGCATTGTTTTCAAGTAGATGCCCTTCTGACCACGAGTGTGTGAACGACTATGGTAGCTTTACCTGCATCAACACTACATGTCCAAGCAAATTTTACATCCAGAGAACTCCATATGAATGCAAGCTCATGTGTCCTGGGAACCAGGGAAAATGCGCCGACCTGATAATTCAGTCAATTAAATGGACAGCCAGTAAGTTCAGGAAAATCGTGAACCCAAATGGATTCGTCTTCACCTATAGTCTTCGAGTATCATCGTATATCAACGTGCAGGTTAATTTTGAACTTGTTTCAGGAAATGAAGGTGGCGAATTTTTTCTGCAACGCCAAAGTGAACAAAGAGTACAAATCGTAAACATAAAGAAACTTATAGGACCACGGAGGTATACATTGAGACTTGATGCAAACGTAATGTACAATGGGAGAGTCACAAGCAAATTTGTCTACTTCAACTATATATTTGTATCAAAGTACAGCTTTTAAAGAGGCCCACAAACTTTTTATAACCCGTGCATTAAACGGAGGGTCTGACTGAGCGTATTCAAAGTAAGGATTGAAAAGTCTTGCCTACATAAATAGACTTTGtactttttgtaaaatttagcAAAGTTTTATAGTGTTACACCCATATTCATTGCGCATTTTTTGACTATGTCATCAGTTCAGTAACAACCCATgtgttttttcttctttgttttgctAAGATGTAAATTTTGTCACAAACATGATTTGACCGTCCTGATTTGACAGTAAGATTTGAGACCCGACGGGATAAATCTGTCGGATTCATTTTCTTACAAATGAGAGCCATATGCTTCCCTACAAGTTAGGGGCGttgtacccccccccccatctttTTTGTGTTGGCACAACGTGGATTTCGTTTGCAAATGATGGAATATTAACAatgtcttgttttgttttgttttgctttcagtgtattttcaataaactgCGTACAGGATTTAGGCAATTGAAAGTTACTTCTCCTACTGGAACAGACACATATGCCACACCCTTACATTGACCACGCCTTTAGATtctgattttaattttcctttcaaatcaaaatagatgaataaag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14543	Nidogen-1 OS=Homo sapiens OX=9606 GN=NID1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002012 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR050751 all species →	Family	Extracellular matrix structural protein	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000020 all species →	Domain	Anaphylatoxin/fibulin	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17307	FBLN1_2; fibulin 1/2	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.