Gene detail

Detailed information of ENSSYXP00000000486.1 in Micromussa lordhowensis

Genomic Location: chr9:28833325...28841337
NR annotation: KAJ7356212.1, hypothetical protein OS493_025964 [Desmophyllum pertusum]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000000522

ATGTACATGCATTTCAATGTTTTCAGAACTCTGCTAGCAGCGTTCTTAGTTGTCTGCTGTTACAGTGAATCGCCGCCGATTATGAAGCGAACATGCGGTGTTCAAAATGCGAGGGAGAATCGTCCCAAGTCTCCAGAATCTCCGTATGTTCCTGAGATTGACAACATCCTAATGATGAACGCAATACAGAGCCAAGACAAGGACGCTTACAACGCTTTGTTTAACAGCAACTTGCAATGCAAAGAACGATACCTTGTGCCCATTGCCTGGCACGTCATTTATGACCCACAGGGGAGGGGTAACGTCTCAGATGCCATGCTGGAGAAACAAGTCAAAGTGTTGAACGAAGCTTTCTCGGATTCGCCATTCCGGTTTGCAACGcgTTCTGTGGACAGAACAGAGAACGACTTCTGGTTCAACCGGTGCAGCAAAAAGCGAGAAGCCATTAGGGAAACCCTTGGCATTTCGCCAGCAACGACACTAAATATATACACGTGTCAATTCTTTACTCCCACCTTGATTGGCCATTCGACATTGCCTTGGGAAGACAGCGAGTCGAGTTTAATACACGGAGTGGCGATACATCACGGGACACTGCCAGGAGGCGGGATGGCCACACTTGACCTTGGAGATAATGCTGTTCACGAGATCGGACATTACTTTGGCCTTTTTCATGTCTGTGAGGGCGGCTGTACGGCAAATGAAGACGATGACATTGCAGACACCCCACGCTGTGCTGCTTACACGTATGCCTGCACAGACCAACCAGTGGACACCTGTAAATCTCAAAGTGGACTGGACCCAATTCACAATTACATGGGCTTTATGGAGGATGACTGTATGTACGAGTTCACGCCGGGGCAGATAACTAAAATGGCGCAGCACGTCAAGACCTTTAGGCCTACTCTGATGAAAAACATCTACAGACCCTGTAAGATAGATGCCGTCTTCCGCTGGTCAAACAGGCTCGTCTATTTCTTCTTGGGGTCGAATTACTACCGCTACAACGAAAGTCGTCATGTGATCGACCCAGGCTACCCTCGGCCAATCAGTGACCACTGGAAGGGTGTTCCTTCTTCGATTGACGGCGTCTTTCGATACGCCAACGGCTTTACTTACTTCTTCAAGGGAAACCAGTATTACAGGTTTAATGACACATCGCTGAGCGTCGACCCAGGCTACCCTCGGCCCATAAGTGATTACTGGGAAGGCGTTCCAAACGACATCGATGACGTCATCAGTTACTCGAATGGCTTCACGTACTTCTTCAAAGGAGCACAATACTACAGGTTCAATCCGCGTAACGAAAGTGTGGACCATGGCTATCCGCGCTCTGTAAGCTCCTACTGGAAAGGGGTCCCAAGTGACATGGAAGGCGTTTTACCGTGGCATAATGGAGGTGTTTATGTGTTTAAGGATACCCAGAACTGGTTCTTTTTGCACAGCAGTCAATCTATTGGGGTATCTTCCAGCTACCCAAAGTCAATCATGCAGTGGTGGAACGCTGAGCCCGAGCTAACTGACGCGGCGTTTCTGTGGGGTGATGGGTTCGCGTACTTCTTTAAAGGGAAACTTTACTTCCGGTACGACAGCAGCCAGGAAAAAGTGGAGGATGGATATCCACGTGCAATAAACTCATTTTGGAATGGAATACCAGATATTGGACTCCTGCATTCGTGCATACTTAACTGTCGCCTTCCCGAGGGGCTTTTTAGGAACAACAAAACTAGAGAACAATTAATACTTCAgtttaaacaaaaacaacaaaagataAACGCTTTCATTCCCGTTTATTTCAGATACACCGACGGTATCACCTATTTCTTCAAAGGCTCTGATTACTACCGCTTCAACGACACAGCCCAGGCAGTGGACCCAGGCTACCCACGGTCGATAGCCTCATTTTGGAAAGGCGTTCCAGATAACCTCGATACGGTGCTCTCAGGGAGCAATGGTCAGACGTACTTCTTCAAGGACAACCTCTTTTATCAATTTAACAACACAGCAGAGCGGGTCGACATTGGCTACCCTAAATCAATAGCCCTGTGGAGGGGAATACTTTACCAGCCGTGA

Transcript

ENSSYXT00000000522

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C9S5C6	Extracellular metalloprotease VDBG_01143 OS=Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) OX=526221 GN=VDBG_01143 PE=3 SV=1
A4RGT4	Extracellular metalloprotease MGG_08041 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MGG_08041 PE=3 SV=1
D1ZSU8	Extracellular metalloprotease SMAC_06893 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) OX=771870 GN=SMAC_06893 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009927 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05572 all species →	Peptidase_M43	Pregnancy-associated plasma protein-A	Family	Interproscan
PF00045 all species →	Hemopexin	Hemopexin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008754 all species →	Domain	Peptidase M43, pregnancy-associated plasma-A	Interproscan
IPR018486 all species →	Conserved_site	Hemopexin, conserved site	Interproscan
IPR036375 all species →	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR000585 all species →	Domain	Hemopexin-like domain	Interproscan
IPR018487 all species →	Repeat	Hemopexin-like repeats	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47466 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07763	MMP14; matrix metalloproteinase-14 (membrane-inserted)	EC:3.4.24.80	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →