Gene detail

Detailed information of ENSSYXP00000001413.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: XP_020616312.1, DNA-directed RNA polymerase I subunit RPA2-like isoform X4 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSYXT00000001522

TTTTATGGCAAGGAAGCTGTATGCCTTGGCGCTAGAAAAATGCGCCCCAGAGTCGGCAGATAATCCTATGATGCAAGAAGTACTTCTAGGTGGTCATTTGTATCTCATGTGTTTAAAGCAACTTTGCTACAAGCAATGACACATAGTGGAAACATATCGCACCAAATGGAGTATCTTCTTGCTACTGGAAATCTGGTATCAAGAACAGGTCTTGGACTTATGCAGGGTTTCTGTGTCCTGTTCACACTCCAGATGGTGCTCCTTGTGGCTTGTTGAATCACATGTCAGCATCTTGCCAGGTTGTGAATACTGTACCACAGACTGCCCATCTATCCAGAGTCCTGTGTTCATTAGGAATGACTCTGAATGATGCCCCAGCACCTGCTGATATGAAGTCTTGTTATACAGTTATATTGGATGGTAGAGTCCTTGGGAGAGTTGATATGGACCTTGCTCCAGCCCTTGTTAACAGGCTGCGCATGTTAAAAGTACTTGGACAAGAAAAGGTTCCTCAGATGTTAGAGATATGTCTTGTGCCCATTACAAGTGTAGCCAGTCAGCATGCTGCCCTCTACCTCTTCTCCACTCCAGCTCGGATGATGAGGCCAGTACTCAACCTGGCAGCTGGTAAAGTGGAAATGATTGGCACCTTTGAGCAGGTTTATATGAACATTGCTGTTGTTAAAGAAGAATCTCATGAAGGGGAAACAACTCACCTTGAACTGAAACAGACAAACATGTTGAGTGCCGTTGCAAGTTTAACACCATACTCTGACTTTAACCAAAGTCCTCGTAACATGTACCAATGTCAGATGGGAAAACAAACGATGGGAACACCGGCTCAGGCGTTGAAACACCGCAGTGATAACAAACTGTACAGGATACAGACACCGCAAAGTCCTCTTGTTAGACCCACTGCTCATGACGAGTTGGCCATTGATAACTACGCTGTAGGAACAAACGCTGTTGTGGCTGTTATCTCGTACACGggaTATGACATGGAAGATGCAATGATCCTTAACAAAGCATCGTTTGAGCGTGGCTTTGCTCATGGCACCGTCATAAAGTGTGAGATAGTGGATCTTATAAAAATCTCTGGAAGTGACTCCAATACTTCAAGCCTCAGATTTGGTTGTCTTCCTGATGATAGAAGAGTCAAAGGATTTCTTGACACTGATGGTTTGCCACCAATTGGAGCCTTGCTGGAGACAGGAAACCCATATTACTGTTACATTGACGACAATACCGGTCAAGCAAACATCAAGAAATACAGCAGCTTGGAAAGCGCGATTGTTGACGATgtaaaaatTCTTGGAAATGATGAAGGCACTGGTTCACTCCAGAAAGCTGCTATTAAATTGAGGATACAGAGGAACCCAATCATCGGAGACAAGTTCTCAAGTCGGCATGGACAGAAAGGAGTTTGTAGccaGAAATGGCCCATTGAGAATATGCCTTTTACAGAATCTGGCATGACACCAGATATCATATTTAATCCTCACGGCTTCCCTTCTCGTATGACAATCGGTATGATGATAGAGAGTATGGCTGGGAAATCAGCCAGCCTCAATGGACTTGCATATGATGCTACACCCTTTACCTTCTCAGAAGATGATCCTGCTATTGATTACTTTGGAAACCTTTTGACACAATCTGGGTACAACTACTATGGTACAGAACGAATGTATAGTGGAACGGACGGCCGTGAGTTTGAAGTTGACATCTTTTTTGGAGTAGTTTACTATCAGCGTTTGAGACACATGGTGGCAGACAAGTATCAGgtTCGGACAACAGGCCCTATAGATATACTGACACATCAGCCAGTGCAGGGTCGTAAAAGACAAGGAGGCATTCGATTTGGTGAAATGGAAAGGGACGCCCTACTGGCGCATGGTACATCGTTTCTGTTGCAAGATCGACTCATGAACTGTTCAGATAAAACAGTGGGTCAGGTGTGTACTAAGTGTGGCAGTATACTCTCCCCTCTCCTGGACAAACCTGCCGTTGAGGTGGCAGCTGCGGCTGCGCACAGAGAACGAAAGTGGACTTGCATAACTTGTGAAAGCAGTGAACATATTCAGCTGTTAGCTTTCCCTTACGTCTTCCGATATCTTGTGGCCGAGTTGGCAGGTATGAATATCAAAACGTCTTTGGAAGTGAAGCGAGTAGGAACTTAAGAGTCGAAGAACCTGCTGTGAAAAGGGGCAATGTGCAAAATGTCCAGCTTAGGGGACGGCTACATGTGCAAGGAAGTGGATACAGTAGAGTCACAATCCCGTCCCGAACCCGTGTGTTTTGGACAGTGATATTTATCTGCGACGTTTTTATGATACAAAAGCCGCTGACGTCAAGTTGATGCGACGAGGATTTACCAAGGAAGACATGTTTACCCGAATGAATAAAGGTAGTTCATTCAAACGCTTTTTTCATTTCTGTGGTTCCTGTGGCCATTTTGAGATTTCTTACGCGGAAACTGTTAGTGCGGTTAAATCGAAAACGACGGGCTGTAAGTTGCACTGGGTGATGCAACATTGTCATCTGTTGTGTTGTCTTAACTGCCTACAGAGCGGGCCACGACGTAATAAAATTGTGTCCAGAACGTGATAAATACACAGAGAAATTAACTTGTTTCTAGAACGAGAAGAAATGGCCAAGTAATTCTTGACAGGGAGGGTAGAGCCTTTTTTGTGACAGGCCAGTCTACTCTGAATCAGAATCAGGCATTTCCCTTCAAAAAGAACGACAATATAATGCCATTCACACTCtgtgaaaattatttttaatccaTAGAAACGTAAATACAATTAATAAAAATGAACTTATCAAACGCAATCTAGAGTCACCTTGACAATAAACCTTGAGTGATGTGAACGTGAGAAGCACAATATGAAGATCCTATCATGTTACTTCAATTTTCTCGCACACTGCTGGGAGCTATGCCAAGCC

Protein

Uniprot

Uniprot term	Description
B8JKD7	DNA-directed RNA polymerase I subunit RPA2 OS=Danio rerio OX=7955 GN=polr1b PE=3 SV=1
Q9H9Y6	DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens OX=9606 GN=POLR1B PE=1 SV=2
Q5REE8	DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii OX=9601 GN=POLR1B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04560	RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	Domain	Interproscan
PF06883	RNA_pol_Rpa2_4	RNA polymerase I, Rpa2 specific domain	Domain	Interproscan
PF00562	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR014724	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR007121	Conserved_site	RNA polymerase, beta subunit, conserved site	Interproscan
IPR007641	Domain	RNA polymerase Rpb2, domain 7	Interproscan
IPR009674	Domain	DNA-directed RNA polymerase I subunit RPA2, domain 4	Interproscan
IPR037033	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR007120	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0001054	Molecular Function	RNA polymerase I activity	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan