Detailed information of ENSSYXP00000001608.1 in Micromussa lordhowensis

Genomic Location: chr9:23507406...23523924
NR annotation: XP_027050776.1, TBC1 domain family member 1-like [Pocillopora damicornis]
Species Micromussa lordhowensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q86TI0TBC1 domain family member 1 OS=Homo sapiens OX=9606 GN=TBC1D1 PE=1 SV=2
O97790TBC1 domain family member 1 OS=Bos taurus OX=9913 GN=TBC1D1 PE=2 SV=2
O60343TBC1 domain family member 4 OS=Homo sapiens OX=9606 GN=TBC1D4 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003496 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00566
all species →
RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan
PF00640
all species →
PIDPhosphotyrosine interaction domain (PTB/PID)DomainInterproscan
PF11830
all species →
DUF3350Domain of unknown function (DUF3350)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR006020
all species →
DomainPTB/PI domainInterproscan
IPR035969
all species →
Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR000195
all species →
DomainRab-GAP-TBC domainInterproscan
IPR050302
all species →
FamilyRab GTPase-activating TBC domain-containing proteinInterproscan
IPR021785
all species →
DomainDomain of unknown function DUF3350Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47219
all species →
RAB GTPASE-ACTIVATING PROTEIN 1-LIKEInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for ENSSYXP00000001608.1 in Micromussa lordhowensis.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSSYXP00000001608.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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