Gene detail

Detailed information of ENSSYXP00000001666.1 in Micromussa lordhowensis

Genomic Location: chr9:21950913...21991398
NR annotation: XP_020620256.1, heat shock protein 75 kDa, mitochondrial-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000001788

atggcggccgttgTGGGTTTACTACTACAAACAAATCGTATTCCCGTGCGTTATTTGCCGCCTCGCGTTTCCAGGTTGAAATACTGTCACGATATTTTCCGCCGACAGAATTATGGGCTTGCAAAACTACGTCTAATGAACAGCGAACCAGAACGAAATGTTCAGATACGAAATGGATTGAAATATTTCCAAATGAGGGCCTACCCAAACATTTGCCGAAGAGCTTTGTCAGAAAATTTGACTGACAAGGGACATCTATCCAAGAATGCAGATTCTGAGGAGGAAGATGACACTGTGCATGTTATtgctgaaaatgaaaaagtagTTGGTGAAGCCCAAAAGCATGAGTTTCAGGCTGAAACAAGGCAGTTATTGGACATTGTAGCTAAGACACTCTACTCAGAGAAAGAGGTTTTCATTCGAGAAGTGATATCTAATGCTTCAGATGCACTGGAAAAGCTACAGTATCAGTTCATGACTGGAAAGCATGTTGCAGAAAGTGAACTTCCTCTTGAAATCAACGTTGCCACAGATCAGGAGAAAGGGACACTGACAATAAAGGATCATGGTATAGGAATGACAAGAGATGAACTGTTAGGTAACCTGGGTACTATAGCCAGGTCAGGATCAAAAGCATTCCTTGAAGAGCTTGGAAAACAAGGACATGGAGATTCTAGAGAGAAGAgcattattggacagtttgggGTGGGCTTCTATTCCACATTCATGGTGGCAGACAGAGTTGATGTGTACACACGTTCTTTTTCTCCAGACAGTAAAGGATTTTTGTGGACTTCAGATGGATCTGGCTCATTTGAGATTGCTGAGGCAGAGAATGTATCTCGGGGAACAAAAGTGGTCATGCAATTAAAGGAAGCCTTTAGGaatttttcattcaaaactaCAGTTGAAGATATCATCAAGAAATACAGTAACTTTGTTGGTTTCCCCATATATCTGGATGGCACATGCATTAACACCATTCAGccATTGTGGATGTTGGATCCCAAGGACATAAGTGCTAAAGAACATGAGGAGTTTTACCAGTTTATTGCGAAGACGCATGACAAGCCGAGATATACTCTTCATTACAAGACAGATGCTCCTTTAAACATCCGTAGTATATTTTACATCCCTGAAACCCTTCCACAGTTGTTCACTGTTCAGCACATGGAGCATGGAATCTCACTTTACAGCAGGAAAGTTCTTATTCAGTCCAAGGCTCACAACATTTTGCCAAACTGGCTGCGGTTTGTTAAGGGAGTTGTCGACAGCGAGGATATTCCACTTAACCTTAGTCGTGAGCTTCTTCAGGAGAATGCCCTTATAAACAAGCTCAGTGAGGTGCTATCAACTAGAATTGTCAAATttcttcaacaacaacaaaagaaggACAGAGTTAAATatgaaaaattcttcaaggatTGTAGCACTTTTTTTCGTGAAGGAATTGTTAGCACTAACAGTGAAGATACGAAACAAGAAGTAGCAAAACTACTGCTGTTCGAATCATCTCATGAAAAGACTGGAGTTCTGtcatcacttcctgtgtatgtTTCACGCATGAAACCAACTCAGAAAAATATCTACTACTTGTGTGCTCCAAGTCGTGAAGTTGCAGAGACATCTCCTTACTATGAGGCGCTGAAGAAAGATGATGTGGAGGTTTTGTTCACTTACAATGAACAAGATGATGTTGCCCTGCACTACCTCAGTGAATTTGATGGGAAGAATATCATGGCTGCCGAGAATTACTTTGCAGTTGACAGAGAAGCCAAACTGTGTGAGTCAGCAGAAACAAGTGAAGGTGACCAGTCCCCAGAATCTCTAACAGAAGAGCAAGCAAAAGAGTTGGCAGACTGGATCAGTATAATCCTTGGAAAACAGAAAGTTTCTGTTGTTAAGGTATCCAAACATCTGAGTCAGACGAGCCACCCAGCGATGGTGACTGTACCAGACATGGTGGCAGCTAAACACTGGCTCAAAGTCATGCGAGCGGAGCAATTCCAAGACATTGACAAGGCCAAGTATCAGATATTTCAGCCTACACTGGAAATCAACCCCAGcCACGAATTaatcaaaaatttacaaaatgtacGGTCAGTGAATACAGATCTAGCAGCCCTGGTGGTACATCAGCTGTATGACAATGCCATGATGTCTGCAGGACTACTTCACGACCCCCGCAACATGGTGGGAAGATTAAACTCTCTGTTAGCTAAAGTGCTGGACTCTTCCAAGTTACAGTCTGATGTGGCAGTATAA

Transcript

ENSSYXT00000001788

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQN1	Heat shock protein 75 kDa, mitochondrial OS=Mus musculus OX=10090 GN=Trap1 PE=1 SV=1
Q12931	Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens OX=9606 GN=TRAP1 PE=1 SV=3
Q5XHZ0	Heat shock protein 75 kDa, mitochondrial OS=Rattus norvegicus OX=10116 GN=Trap1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004543 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00183 all species →	HSP90	Hsp90 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR001404 all species →	Family	Heat shock protein Hsp90 family	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR037196 all species →	Homologous_superfamily	HSP90, C-terminal domain	Interproscan
IPR020575 all species →	Domain	Heat shock protein Hsp90, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11528 all species →	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09488	TRAP1, HSP75; TNF receptor-associated protein 1	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →