Detailed information of ENSSYXP00000001777.1 in Micromussa lordhowensis

Genomic Location: chr7:1130911...1136647
NR annotation: XP_020611549.1, hypoxanthine-guanine phosphoribosyltransferase-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9W719Hypoxanthine-guanine phosphoribosyltransferase OS=Gallus gallus OX=9031 GN=HPRT1 PE=2 SV=1
P47959Hypoxanthine-guanine phosphoribosyltransferase OS=Meriones unguiculatus OX=10047 GN=HPRT1 PE=2 SV=2
P00492Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens OX=9606 GN=HPRT1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003271 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00156
all species →
PribosyltranPhosphoribosyl transferase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005904
all species →
FamilyHypoxanthine phosphoribosyl transferaseInterproscan
IPR050408
all species →
FamilyHypoxanthine-guanine phosphoribosyltransferaseInterproscan
IPR000836
all species →
DomainPhosphoribosyltransferase domainInterproscan
IPR029057
all species →
Homologous_superfamilyPhosphoribosyltransferase-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43340
all species →
HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004422
all species →
Molecular Functionhypoxanthine phosphoribosyltransferase activityInterproscan
GO:0006166
all species →
Biological Processpurine ribonucleoside salvageInterproscan
GO:0000287
all species →
Molecular Functionmagnesium ion bindingInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0006178
all species →
Biological Processguanine salvageInterproscan
GO:0032263
all species →
Biological ProcessGMP salvageInterproscan
GO:0032264
all species →
Biological ProcessIMP salvageInterproscan
GO:0046100
all species →
Biological Processhypoxanthine metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00760hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferaseEC:2.4.2.8
Drug metabolism - other enzymesko00983deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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