Gene detail

Detailed information of ENSSYXP00000004310.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: XP_020603208.1, ankyrin repeat and SOCS box protein 13-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSYXT00000004482

GAAAGCTTCTAAATTCATCAGAAATGCCCTAAAACTTTCTAATCTGCAACTGTAAAATAATAGATCtcaattttttgtttaaaaagaatactTAGCAAAAGCTTATAAGGCAACCTAGTTATTTGTCCTGGTTCTGCATGACTATTGATACTTTCCCCTCTCTACAGGGTGTATATGGTCATGCTACTTTGTGACCAGGCCTTGTTGATAATGTAGCTTTCAAGAATATACACAGGTCGGAAATGATTCAGGAAATAGCCGAAGATTTCTCGGCTAGCTCATGTCTCGAGCTGAATTAAATGATGGACTCAAATGAGTTTCTTTTGCAAGCAATCAGGGATAACAGGCATCCACTGGAATACATAAAGAATTTGCTGGCATGTAAAGAAGTCTCTGTGAACTTTGCTAATCCAATTAATCAGCAAACAGCTCTCCATATAGCAGCAAGACGTGGAGATGTTGAACTTATAAAATTGCTGGTTTCTTTTGGGGCTCACATTAATGGTGGAACTGTTGATCTTATGACACCTTTACATGAAGCGTGTCTTGGTGGTCATCCTGAGGTCGTAGATGTCCTGATTGCTGAAGGAGCTGATGCAAATGCACGTAACATAGATGGAAGTACCCCACTGTGTTTTGCTTGTGCCAAAGGATCCCTAACATGTACTCGTCTTTTATTAGAAGCTGGGGGTGAAGTGAATCCATCGTTGACGGTTACCTTCCCACCCCTTCACGAGGCTGCATTAAATGGACACATTCACTGCCTAGAAATACTAATGCAGATGGGTGCCGACCTAGAGAAATCGGAGAATCAATTTGGAACGGCTTTGCATGTCGCTTGCCTTCGAGGTTATGTGGAATGTGTGAGAATTTTACTTCATGCCGGAGCCAATCCTAACGCAATCAAAAGACACCAAGCTCCTCTGCACACTGCAGCTCTGTGTGGATATGAAGACTGTGCCTCACTGCTTATAGATTACGGGGCAAATGTTTACCAGAGAAACTTGCAGAGTAAAAGACCTGCAGACTTAGCTACTGATACAGCATGCAGAAAGATACTTCAGGCTAGAGCTGAAACTCCGCCTAAACTGCTTCAAAGCTGCCGTCTTCTCATCCGACAGCAACTGTCACGCCCTCCAGCGGACAAGATTCCCTTCCTACCCCTCCCTAGGAGCCTCAAGGATTACCTCAACTACTATCATCAGGACGAACCATATACATGCAACCCCGATCCCAGACCTCTCATCTTTCTCTAGCCATTATCAGAGATTCCTCTTAGGAAATCAGTGGTGTAACGATCGAAGAAATTGCAAGCACTGGCCAAAAAAAACCGTCGGAAATAAGTTCTGGAGAGCACGATTTGTTTGAGGCAAGGAATTCCAGAAACTGGTACCTGTTTCCAAGTACCCGAGTATCAAATTTATTGAGGTTTCTGTGGGCTTCAATGTGGAAACAGGCTTAGTTCCAATAGCAATTTAGTAATTGAGGTTGTAATCGGcgatgaacttgaaaaagtGGCGTAACAAGTTTGTTTCCTCAAGTGCCTATAGGATGCTATAGTTCAGGTCTGGTTTTTCACAACAATGAAGACGGCGGCGACTTAAAACAGAGTATTTTGAAATGCTCAACGTTTTTAAATAGACATACACACATACAGATGGTGAGTTCGTTTCCTTTGACTTTGAAAACATGCCGCTGTAACATTCAAAAACTCATTCATTGCACACAAATTGTCTAACATATCCCAGAGGACGCGGCAGCTTTGTAAGATCTCGGCAAATTACACAAAGACAAAGTTATCAAAGCGGCCGACAAAAGTGTGAGTTTGGCGGACACGTACCGACAAGGAGCTTCTTGGCAACTACCCCAGCTTCTTGGACATCGATTCCCATGGTCAATCCGTTGTAAGTGGTAGACCTGATACCAAAGCGGACAAAGACCTGTTCACAGCCTTCATGTTTTATTTGATCGTTGAAAGCGTGGATAGAATCATGAGAGAACTGGATTCCGACACGGCATTCATGTAAAACaggctttattttgttttcctttaataGTTAGTTATATTTTAAATAAGATTAATCTGTAGTTTTTCCTAATAACTTGTagctatttatattatattgttacttgcctgatgtattttaccgtgtttttaaataaagatgatgatgatgatgatgacgatgatggaTACCAGCGCTAAACGGGAGACTTTTCACGCTCGCTATTCCTTTCGCGTTGAAAAacagagg

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SOCS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525	SOCS_box	SOCS box	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496	Domain	SOCS box domain	Interproscan
IPR050745	Family	Multifunctional regulatory proteins	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036036	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24189	MYOTROPHIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10335	ASB13; ankyrin repeat and SOCS box protein 13	-	Ubiquitin system	ko04121	deepkoala