Detailed information of ENSSYXP00000004412.1 in Micromussa lordhowensis

Genomic Location: chr7:13728997...13753354
NR annotation: XP_020622973.1, zinc finger protein 830-like isoform X3 [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DJ13Zinc finger protein 830 OS=Xenopus tropicalis OX=8364 GN=znf830 PE=2 SV=1
Q96NB3Zinc finger protein 830 OS=Homo sapiens OX=9606 GN=ZNF830 PE=1 SV=2
Q63ZM9Zinc finger protein 830 OS=Xenopus laevis OX=8355 GN=znf830 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007028 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12171
all species →
zf-C2H2_jazZinc-finger double-stranded RNA-bindingFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036236
all species →
Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR003604
all species →
DomainMatrin/U1-C-like, C2H2-type zinc fingerInterproscan
IPR040050
all species →
FamilyZinc finger protein 830-likeInterproscan
IPR022755
all species →
DomainZinc finger, double-stranded RNA bindingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13278
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005681
all species →
Cellular Componentspliceosomal complexInterproscan
GO:0033260
all species →
Biological Processnuclear DNA replicationInterproscan
GO:0033314
all species →
Biological Processmitotic DNA replication checkpoint signalingInterproscan
GO:0044773
all species →
Biological Processmitotic DNA damage checkpoint signalingInterproscan
GO:0048478
all species →
Biological Processobsolete replication fork protectionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSSYXP00000004412.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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