Gene detail

Detailed information of ENSSYXP00000005407.1 in Micromussa lordhowensis

Genomic Location: chr9:21738611...21898911
NR annotation: KAJ7389563.1, hypothetical protein OS493_030611 [Desmophyllum pertusum]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSYXT00000005621

GAATGCCAAGGAGCCAACAGAACAAATTTCAACATGGCAAATTCATCTTATCTTACAAAAGCTGGAGATGGCTTTGGGTCTCATGCATCTGATGACGTACTGGTTACTACATTTTTTGAGTCTGCTAAAGGTTGGGATGAACCCTCCAAATATTCTGCCATATGTATGTATCCagtgaaagaaatcaatgaaGCTATGATGTCTAACCTCAGGAATTGTACTAATCATGTTAATGCTGGTGAGAAATTTGGGCTTCCCTGGGTACTGGGTAAAGATGGAGATAAAAAATGTGCTGACCAGacTAGTAATCCAACCATATCAGTTGACTTCTGTCCTACAAGATCATTTGCCTTCCATCCATTTCGTGGAAAAATGCCTTTACGTAAAAGAGCTGTGATGCAATATGACAAGGGAAGGCTAAGTGCTATTGCTGCAATGCCATATCAGAATCATACAGTGATGTTTGTTGGTACTGAACATGGGCAACTGCTCAAGATGTCTGTAGAAGACGGTCAACAGCAAGTTGAACCTTACAGTGTTTTGCGTATTGGTTCAGATGAGGTGCTGCAGATAATAGTAACCAGTGACCAGAAACACTTGTACATCTTGAGTAAACACAAGGTGACAAGAGTGCCAGTTGAAGAGTGTAGCATGTCTTCGTCCTGTGATGACTGTGTCAGACCTATGGATCCTTTCTGTGGCTGGTGTACATTATACAACAGATGCTCTCAAAGGCATGTCTGTCCAGAAGCTGATGTACACCCTTTACAATATGTGACAAGCTCGTCTAATTGTGTGGAATTTGCCTCTGTCAAACCTGAACAAGTTCCTCTTGGCCCAAGTGTTGAATTGACAGTAGTGGTCTCCAATCTACCACCTTTGACAGGGCTAAAGTGCTACATTCATGGTAAAGAGAGAGCTACAAGTCCACTTTCAGGAAATGTAGTTAAATGTAAGACACCCCCAAAGGAAGAACTGCCTAGTATTTCAAGTGATACAGGTGATGTCTTTGTTGATCTTGCCCTCTTCTCCACCCAGTCTCAGACAATTTTTCTTACCACGAAACTTGGATTTTATAGCTGCTCAGCCACTAAAGGGTGTACAAATTGTGCTGAAGGAAATTACCAATGCAACTGGTGTACATATCTGGGAAAATGCACCATTGATGGAAATGCTGATTGTCCTGGAGAATTTGTGATACCTAAACAGGAACGTACTGCTGACTCAAAAAGTTGCCCTAGGATACAAGGTCAGAAGACATTGCTTGTTCCAGCAGAAATCAGTACTAACATTTCTGTTTCTGCTTATGATCTTCCTGTGCCAAAGTCTGATGCTTCATACAAATGTGAGTTGACCATTGATGGAGCTATTAAAACAACAGATGCAACATGGATCAGTGAAACACAATTGACATGCTCTCCTAAGGAAtATACCTACAGTGCATTGGTGAAGAAACAAGCTGTTAAGTTAGCTGTTATATTTAGGAACTCAGATGTTGGGTATACACTTTTTACTTTCAAAGGCTACCATGTGTATAAGGATATCTGGGATTCAGTTGTTGGTGAAGTTCTGGATTGCGAGCACGAGCCTGGTAACCCACACGACACCCATGCTCTTGCCATTAAATGGTTCAAGATCAAGGACGCATGCCGCAGAATGTAGGTCATGAGCCATTGACACTGTCACATGGATTTCACTTGTTTTTAAAACACGGAGGACAAATCTCAGTGGAAGTGACTGGTAAACGGAGAAACAAGGGTATTGGACTAGAAATTCCGGCTACATATTCGTTTTATCACAAGAAGCCTTCGAAAGTGAAGAAGTTAATAGAACTAATAAGAGGCAAAGAAGATAGAGCAGAAGTTAATTGATATTGAAATACTATAGCTCCAATGTCTATGACATAATAAGCCGTTGACTGAAAGGTTGTTGTCTATTCACCATTTTGACTGCTGTTCAGCGGTTATCTTCTGTCACGTGTTGACATTGTAATTCGTTATATCGAAACATGTCAGTACGCTGGAATAAAGCAAGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15031	Plexin-B2 OS=Homo sapiens OX=9606 GN=PLXNB2 PE=1 SV=3
B2RXS4	Plexin-B2 OS=Mus musculus OX=10090 GN=Plxnb2 PE=1 SV=1
Q8NFY4	Semaphorin-6D OS=Homo sapiens OX=9606 GN=SEMA6D PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001537 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan
PF17960 all species →	TIG_plexin	TIG domain	Domain	Interproscan
PF18020 all species →	TIG_2	TIG domain found in plexin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR041019 all species →	Domain	Plexin, TIG domain 1	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR031148 all species →	Family	Plexin family	Interproscan
IPR041362 all species →	Domain	Plexin, TIG domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22625 all species →	PLEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002116 all species →	Cellular Component	semaphorin receptor complex	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017154 all species →	Molecular Function	semaphorin receptor activity	Interproscan
GO:0030334 all species →	Biological Process	regulation of cell migration	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:1902287 all species →	Biological Process	semaphorin-plexin signaling pathway involved in axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000005407.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →