Detailed information of ENSSYXP00000005864.1 in Micromussa lordhowensis

Genomic Location: chr9:31482254...31499918
NR annotation: XP_020631972.1, uncharacterized protein LOC110068894 [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P1D7Structure-specific endonuclease subunit SLX4 OS=Mus musculus OX=10090 GN=Slx4 PE=1 SV=1
Q8IY92Structure-specific endonuclease subunit SLX4 OS=Homo sapiens OX=9606 GN=SLX4 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003644 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 adaptor Cullin RING|BTB · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00651
all species →
BTBBTB/POZ domainDomainInterproscan
PF09494
all species →
Slx4Slx4 endonucleaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000210
all species →
DomainBTB/POZ domainInterproscan
IPR011333
all species →
Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR018574
all species →
FamilyStructure-specific endonuclease subunit Slx4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21541
all species →
BTB POZ DOMAIN CONTAINING 12Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0000712
all species →
Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0033557
all species →
Cellular ComponentSlx1-Slx4 complexInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006260
all species →
Biological ProcessDNA replicationInterproscan
GO:0006281
all species →
Biological ProcessDNA repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10484BTBD12, SLX4; structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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