Gene detail

Detailed information of ENSSYXP00000006683.1 in Micromussa lordhowensis

Genomic Location: chr3:33798739...33842266
NR annotation: XP_020612263.1, FK506-binding protein 15-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000006980

ATGGGAGCTGTAGAGAGTAAGGCCGAAGAAAACAGTGTCATACGATTCGTTGATTCAGTGGAGGTCAGGCATGAAAAAGGAGCCCCATTTCATGGAAATGACGATGTGTCCACCGACTATATCCCTGAACACAAAGATTGGATATTACACAACCCTAAAGCTGACGATTCTCATGGAATTGCCACAGTCGCTCCAGCAGACACCATGTTGTACGAGGAAAGCTATGAAGACTTTGAGATTCTCGGCGATACGGCAGTACAAAGGAGCAACCAAGGGGACATCGAGATAACAGgcagccaatcagatttaatCAAGATCGACGAGAATCAATCGCCAGTTTCTGAAGGATTTCAGTACTACAAACCTCCAAAAAGAACGTCCTCCAAGAGGAAAACAACGGAACCGAAAGCTGTCCAAGATGGCGGAAAATCGATCTCGCGTGACAGTGTTCTGTCTACCTTGAATAGTTCGTCGAAGCTTGCTTCGTTATTTGGTCAGGATAGAGCGTCATTCTCTGGAGGGAATGAATCCTTGACGTACACGGCACCTAAACAGCCAAAGAAGGATAAACCGGCAGCACAGACCGGTGGTGGTGAAACAGCACTCTTGTGTGCCACTGCAGTTCATGCCTACAAATATGTTAATGGACAATATGCCAGTCAGGGAAAACTGGGTGCCGCAGTTCTAGCTAATCATTCAGCAAATGATTATAGGATACTCATTTATGCTTCTAAACAACAGCAAGTTACCACAGGAAAGATTCACGGAAACTTTTCATTTACGGTGCAAGGAGGTAATTATGCAAGTTTTTACGATGATCAGAGACAAACATGGTCACTCTGCTTTGACTCAgacaaaaatatcacaaactttGCTAAACAGGTTGGTTTATCAAAGTTCAACTCTGCCTCCTCAAATCTGTGTACTCAAGACCTTGTTCTTGGTGACGGAATGGCCATTGAACTAGGAGATGCTTTGGAAGTGAAATACACAGGATGGTTATGGACAAATAATGGTTTTGGAAAAGTGTTTGATGGTAATACTGAGACTGACAAAACATTTAAATTCAAAACAGGAAAAGGAAAGGTTATTAAGGGATGGGAACAGGGTGTGATAGGCATGAAGAAAGGTGGAAAGAGGATAATAGCAATCCCTTCAGCTCTGGCATATGGAGAGAAgGGCGTGCCCTCCAGAGTTCCTCCCAACTCTTCACTCTTGTTTGAAGTTGAAGTTCTAAGGATCAAGTCCAATAGAGAAACAACTGGCTCTCCAGTGACAATCCAGGAACCTGTCGCTTCTCAAAGTGCAGATCAATTGCCCGACATTTTGTCTGAGCCATCTGGTACAAGAAAAAGGTCCACAGACTCAGTGTCACAGCTGAGTGTGTCCAGTGACAGTGGCATTAAGGGGAGGACTGCATCAATCACTGAACAGTTATCTCAGTCCCATGAGAAAGGCACAGACAAGGCTCGCTTGCTTGCCAGAATGTCCAAAATGGGAAAGAATCCATTATCTCTGCCTGGAGCTGCAGTAGCCGAACCTGACCATGAGGACATGGAAGAACCAGACCAGgAGGTTCCACCTAGTGCTGAGCCCCATGTACAAGAGAGAACAGAAAATTACACAACTAGTCCGCAACCCATCAGTTCCAATCCCCATCCCAGTGTACGGGCCAAACCACACCCCCCACCAAGACCAGCACCTCAAGTTCATCCTGAAGTTCACCGACCAGTTCACAATCCAGCACCTCCTCCGCAGCCAATGCAACAACCTGTTATCAACCCACAGCCAATGATGCCGTCAGCATTTACACCACAGCAGCAGGTAGCACTATATCAGcCGCCTGTCAGTATGGGTTATCCGATGATGGCGCCCCAGCCACAGATTATAACGGCACCATATTCAGCcccacctccacctcctccacctcctccgcCACAGCCCACTGCTAATGACGCCATGGTTCCTGTACTGATGGCAGAGACAAGGCAGCAGCAGGGAGAGATACGCATGTCTATTGGCAAGCTGTCAGACAAGATTGACGAGCTTTCAAACAAGGTTGATCGTCATCAGCAGAGTTCAGGTCAACTCTCTGGGCAACTGACTCCTGTTGGTCAGATGGCTGGTATCGGTGCATTTGGAAATCCACAAGCTGCAATGGAAGCTGCTGTATTAGCTCACAACATCACCAGAATAGTGCAGGAAAACGAGAAATTGAAAGCTGAAGGTGCAGAAAAGTCCAAAAAAGTGGAGTTGCTTAATGACAAGATATCAGACCTGCTGCAAAAGAATCAGAGATTTGTTGAACAGAGCAACACAATGTTGGAACAGCGGAGTGACTCATTGCAAGTAAACACTGCGCAGTCGCAAGCACGAGTGTTATCCCTTGAGCAAGAAAAGATATCCATGAGTGGGGAGCTGACAACAGCCAAGACACACCTGGCAGCACTTCAGAATGAAGTCACGTCACTTCGCCAAAGAGAGGCAGAACTTAGCAGCCAATTCAGTAAAGTGTCCTCAGAAGCTGACAAGTACAGAAATGAGCTCACACGTGTTAAAGACTCACACACAGAGAGTAGTGAACAGAGCGATAAACTGAAGCAGAGTCTTAAGGAAGAAAAACAGACAAGGAAAAGACTGGAAAGCAAAGTAGATCACATTGAAGAAGAACTGAATGACTTAAGACATGAAAAGGAAAGTTTGGAAAGGGGTCTCGGAGAACGAAAAAAGAAGCATGCAGCTGACAAGAAAAAGTTTGAAGAGGAACTGGAAGAACTCCGATCACAACAGGAAgatgaaataaaatttttgaaggaaaaacacagaaaagaaaagcaaagcaGTGGATCAGTCACAGCAAAACAGGTTGAACAGGCTGAGTCCGAACTCGAATCCAGATGGACAGAAAAGGCAGAAAAAATGGTTGCACAGACTGAGGAGAAATGGAAGAGAAGGTTTCAGGAAGTATCGGATGAAAAAGAAGAGACggtaaaaaaattggcagagcTTCAAGGAAAGTGGTCAACACTAAAAACAAGCGAAGATGAAAAGGAGGAAAAGATCAAAGATCTCCAGGAGAAATTAGAAGACCTTGAAGGAATACGCGAAAAGTATACGCGACTTCAAGCTTCACAAAGTGACAAAGATTCCGAGATGGAAACATTGCGTTCAACACAGCAAGAACTAGACGCATTACAAGCCAAGTACCAAGAAGTTCGCTCCAGAACACTGAAAATGAAGGAACAATTCGAGGAGCAACTTGCATCCGCATTGGAGgaGCGTGAATCTGCTGTTTCTGAAGCGTATAGCAAGGGTGTGAAGGCAGGGAAAGAGCAGGCTGGTACCAACgacaaacaaccctcagttaaCGTGACAGATGAAGTAAGTCAGAGATTTCAGTTCTTCATGCTGATTGGTCCACACTCTATAGTTACAACACCAAAAAGGAGCcggttccaggctctcggtcagtggggacgatcaaAACAACAAGCGGACGACGTGCAGGGTCTGGTAGCGAAAAAGGAGAGAAAAGTTGAAGAACTTGTGACACATGAGTTCGCTTATACCCAAAAGGGAAGATACTGGCTGTTTTCAAGgGTCAAGCGGATAATGAACAATGTTTACTACATGCTGAGGAATGAATTTGAGGCTGATGACACTTACACCGGGTCGGACATCATGAAGGTTGTTCTCAAGACTATCAAGGAGGTGACCATGAAACTTGTGAGCGGGAAATCAGCCGAGAAAGAAGAaagtgatgaagaagaagaagaggaagaagaagaagaagaggaggaagcagaagaagaagatgatgaggaagaggaagaagcgcaagaagatgaagaagacgaCGAAGACGAAGAGGAGGTTAAAGTaaaggaaaaagaagaagagaaactTGCGAGTGAGAAATCAATCGAGAAGGAAGAGAGTGAAGAGGAAGAAGAGCAAGAGTCGGAGAGAGTAGAAAAAGGAGAGGCGATTAAACTAGGTGTCGACGAGGTGGATGACgacgaggaagaagaagaggaaaaagatAGTAAGAATGTGTTAGCAGAGGTAGAAGCAGAAGTTGATAATACACAGGAAGCCGAATTAGTGAACGATAAACAAAGCGAAGACGAAGTGGCGACAAACGAACAGAAGATGGAAGAAACAGAGGATACAACGCCTGACGAGGAGAGTAGACAAGATGGTGACTCTGGTGAACCTGAAGTAGTTGTAGGAGATTCAAATGATGGGATACTAGAAAGTACTAATGTTCCAGAAAGCGAAGAAAACATTGATAATATAGAAGACAATTTGTCAGAAGCTGACTCGCTTCCAGTGAATCAAGTAGATGTACCTTCTTTAGAGGAGCTTTCTGCGGAGGCAGACGAGGAGAACTCTAGAACTGAATTAGACAGAACTGACGCCTTAGAACATGTGGCGCAGTCTGTACCGGACGAAAGTAAAGTCAACGAGCCTCTGAATGATTCTGTCgctgaagaaaaagaagagcaACCAAAAGAAGAGCGAGACTCAAAAGAATCCCAGGTGGACTGCATGCAGAGTAACGCCATAAGTGAAGACAAACTAAAATTGTTATTTGCTGATGATGATCACGATGACGTGGAAGCAACGTTTGGCTCGTCCAAAAAGAAAGAACAGGAAACTCCGGATTCTCCACCACCTCGAGCTGTACCACCGCCATTGtttgatgatgacgatgacgacgacctTGACTGGtttaagtga

Transcript

ENSSYXT00000006980

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P9Q6	FK506-binding protein 15 OS=Mus musculus OX=10090 GN=Fkbp15 PE=1 SV=2
Q5T1M5	FK506-binding protein 15 OS=Homo sapiens OX=9606 GN=FKBP15 PE=1 SV=2
Q54G21	FK506-binding protein 5 OS=Dictyostelium discoideum OX=44689 GN=fkbp5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002904 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00254 all species →	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF00568 all species →	WH1	WH1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR001179 all species →	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR000697 all species →	Domain	WH1/EVH1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44927 all species →	FK506-BINDING PROTEIN 15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17478	FKBP15, WAFL; FK506-binding protein 15	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →