Gene detail

Detailed information of ENSSYXP00000006828.1 in Micromussa lordhowensis

Genomic Location: chr3:13010122...13010908
NR annotation: XP_020621138.1, transcription factor LBX1-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P4H6	Transcription factor LBX1 OS=Xenopus tropicalis OX=8364 GN=lbx1 PE=2 SV=1
Q2PYN8	Transcription factor LBX1 OS=Xenopus laevis OX=8355 GN=lbx1 PE=2 SV=1
P52954	Transcription factor LBX1 OS=Homo sapiens OX=9606 GN=LBX1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011749 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051000 all species →	Family	Homeobox DNA-binding	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24324 all species →	HOMEOBOX PROTEIN HHEX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000006828.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.