Gene detail

Detailed information of ENSSYXP00000009065.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: XP_020621382.1, uncharacterized protein LOC110059045 [Orbicella faveolata]
Species abbreviation MLORD · all data for this species · gene families

Sequence

CDS

ENSSYXT00000009592

ATGCAAACTCCTATCCCGCTAAATGCCTCCTCAAGCCTCGCTCAAACCAACAACTGTgcttctgaaattctgaaagtGGCTGCACAACAACACATTTCAGCTAACACATTACCAGATGCGTCCCAAAGCAGTAAACAGAAATCTGGAGTTCCTTTACCACCCAGTGTATCATTGGTAAACAGTTTTACAACTTCGCCCTATTTTACAAGATCAGCTAACAAGGCGCGCCTACCAAGTTCTGTAGCACATGGAGATACAGTAGCTCAAAGTACAACTTGTTCTTTGGTCAGCTCAGGAACACCATCTACTAGTTGTCTTACAAATTCCTCAAGACCTGTAACAACAGTTGCTATTTCACTGCCTGAAAGCATTGAACCAGCAATGACTATTTCAGCTGCGACTGCAGCACAAGATGTCTCCCAAACTACTGCTGTCACTTCTGCAGGAACACCATCCACCAATAGTCTTTCAAATCCCTCAAAAGCTATAACAACATTTGCTACTTCACTGCATGAAAGCAATGAACCAGCTGCAACAATTTTAGATTCAGCAGGAACATCAGATGTCTCACAAACCACTGCCATCACTTCTATTGCAATCAGTGTACCGGTGTTGCAAATGATGACCCTCCCTACAATGCAAGCACCATTTTCAAACCAAGCCGTTAAACAGGACGATCCAGGTTCTACCAGTTCTATACCACACCATATTGTGACTCCCCAAATGTTGTCGCAAGCTCTTGCTACATGCACCTTACCAATGAATGCTTCAGCAGCCAGCACTACATGTATGGAAGGGAATTCTAGTACTCCATTAGCAATTCCAAGTTTGGCTAACAAAGTAGAGGATCTGGAACCATCTTCAATATCAGATAATGTGGCAACCATCTCAAGCTCCTCTTTTCCAAGTACAAGCAATTCTGAAGCTTTGGTtgcatttccattaccaatgaCAAAGTTAGATCCTGAAGTTCCAATGGTGTCTTCAGACATTTCAGCAAATGTCACACAAACAACAGTTGCTGCAAGTTCTAGTGCAGATAAAGCTGCATCGGAATCAATGCAAATTGCAAACAGTTCTGCTGCTCCTACTGATCTTCCAGCTCTTTTTCCAGACTTTACCCCATGCAGCAAATGTAACTCTATTCTTGTTTGTTCGTGCCCTGGTCCTTCCAGTATCGGAGAAGGTAGCGGAGCTGGTCCTGTAACTTGTCAAGCTGACTGTCAAGGTGACTGCACATGTAATGGAATAAAGGCAAACCAAGAGGATGGTTTAAATCCCTCTAAACAAGATGTGAAGCCTCAGATTTTTCCTGTTGTGCCACTGAATGTCTTGGATCAACTCTTCGATGGCCTAGTTGAATATGACAAGGTTGCAAAAGCTGAACAACCCGAGGCCATTACCACAAGGCTGTTCCCTTACCAGCTACAAGCTCTAAACTGGATGATGACAAGAGAAAATAATACTGACCTAGCTGCATTCTGGACACAAGTCAACAAGAGCACATGGTTTAACAAGGGAACAAACTGGTCCACTGACAGAAAGCCTAACTCTTCCAAAGGCGGCATACTAGCAGATGATATGGGACTTGGAAAGACTCTTACTGTTATCACCCTTATTATGGCCAATCACATTAATGGAAAGCCAATGTTCTGTAGGAGATCCTCTACTAACAAGGTTGCATCTACTTTAGGCCAAGATGGAGAACGTAAATTTGAGCCAGCAGAGAAGGTGCCACGCAGGTATAGCAATAATGGTGACAACGATGGCGATGTTGAAATGGATAACAAAGAAGCAGTTAAGACAGTAactataaagaaaagaaaagagcttGGAGACAAAAAGAAAAGGTTGGCAGACAGTAAGGCTTTAAAACAGCCAGGCTTTAAATTCAGGCAAATGTATCTCTCCAAGTTCTCCAGcaaagcaataaaaaaagagaaattcaAAGAGGAGAAAGAAGTTCCCAAACCTAAAAAGACACCATCGCCAATTAGCATTGATACTGACGATAACGTCGACGTGGTTACGCCATGGCTGTCTGCTGGCAAAGGCAGCACTAGTGCAAATGGaactaacaacaacaaatctcaATCAGATGACGAGCATGGTGCTACATTGATTGTGTGCCCACTTTCTGTGCTTAGTAACTGGACGGACCAGATATGCAGCCATATTCACCCAGATGTCAGTCTACAAGTTTACATGTATTATGGAGCAGAGCGACTGAGAGATGTGAAATTTCTCAGACAACAGGACATTGTACTGACGACATATCCTACACTGACTAATGACTACAGCAGAGTAAGTATTGTGTCGCtttgtgcatgtacatgtacatttatAGATTACTGTCTGATGATGTCAGTTTGGGATTCTCTTTGTCTTCCAGTCGTATTTGGGAATAATGACTCTCCACTTCACAAGATTCAGTGGCTGCGTGTTATTCTAGATGAGGGCCATACCATAAGAAATCCGCAGACTCGTCTCACCAAAGCTATGATAGATCTAGCAGCAAAACGTCGATGGGTCCTCACAGGAACACCAATACAAAACCGGCTGGATGACCTGTGGTCTGTGTGCAAATTTCTTCGCTTAGAACCATTTGACGACAAAGGCTGGTGGAAATCTGCGCTGGCATCAAGTGTGAGGAGAGGAGATGAACAAGGCGTAAAGTATGCTccatcttgcccTCGTTTGCAGAAACTTCTCAAGCACATATCAATCAGAAGACTCAAGACGGATCAGGACGAGGGAAAACCACTCGTGAAGCTGCCGCCCCGTACAGTGGTCATTCAAGAGGTTGAGCTGTCTGAGGAGGAGCGGAAATTGTACGATGCCATGCAGAACCATGGCCAGCTGATCATAAGAAGAATCTGTCTCGACCCGAAGGATCTCAACAAGGCTATTCTCCGGGAAACTATCCTATCCAAGTACGCGCACTGTTTCGCTATTTTAATGCGTCTCCGGCAGTTGTGTTTGCACCCACAGCTCTGCGCTAAAGAATGTGAATCACTGCAACATGCGCAGAATCTCTTACAAGGGCTGGATGACTCAGATGACGACGATCTCGATGTGGATCACGATACTAACCGACTCATCAAAGACCTAATCATGACGTTATCTTCGGGGAGTGACGAAGAATGTTCGGTGTGCCTCGACTCCCTGGTCGAGCCAGTCATCACGCGCTGTGCACATGTCTTCTGCCAGCAGTGCATTATGGACGTTTTGACGGCAGATAACCTTGCTCCTCGCTGTCCGCTGTGCCGGGCGCCGCTAAATGAGAATGAGCTGATTAAAGTTCCcgagaagaagaaacagaaaccAGAAGCAAAGAAAACTAGCGACGAAGCTGGAGAGTCTAAGAAAAGTTCCAAGCTGGATGCATTGATAGGAGCCTTATGTGCCATCCGTGATAAGGACCCGTCCACAAAGAGCCTTGTTGTGTCCCAGTTCACCTCATTCTTGGATATTATAGAGAAAGCGCTCAATAAGGAAGATTTATCCTTCGTCAGGCTGGATGGAAGAATGACCCAAGAAGCGAGGGCCCGCGCCATAGAGAACTTTTCCGACCCTAGTTCCAGCTCTCCTAGAGTGTTCTTGTTGTCACTGACAGCTGGGGGAGTGGGTTTGAATCTAACGGCTGCTACGCGAGTTTTCCTTATGGACCCGGTAGGTCAATGCTTTGTCTTTCAGTACATTGTGATGAATTCCGTGGAAGAGCGCATGCTCAGCTTGCAGGAACAGAAGCGGACGCTGATGGGCCAGGCCTTCGGTTTACAGACGCAGAGTCAGGAAGAACGAAGGCGTGCTCGAGTGCGGGATATCAAGCATCTGATTGGCCTGTGA

Transcript

ENSSYXT00000009592

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PCN7	Helicase-like transcription factor OS=Mus musculus OX=10090 GN=Hltf PE=1 SV=1
Q14527	Helicase-like transcription factor OS=Homo sapiens OX=9606 GN=HLTF PE=1 SV=2
Q95216	Helicase-like transcription factor OS=Oryctolagus cuniculus OX=9986 GN=HLTF PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001701 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050628 all species →	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626 all species →	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000009065.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.