Gene detail

Detailed information of ENSSYXP00000009075.1 in Micromussa lordhowensis

Genomic Location: chr3:44932825...44951778
NR annotation: XP_020625116.1, pre-mRNA-splicing factor SYF1-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000009604

ATGAGATATATAGAGCACAAGGCTAAAAAGGGCTCCAATACAGCATTGAATCTGCTCTATGAACGTGCTCTCAAGGAACTGCCTGGAAGTTACAAAATTTGGTACCTGTAtctgaaagaaagaagaaaacaagtgaGAGGAAGGCCAATAACAGACCCTGCATATGAGGACATAAATAATGCTTTTGAAAGATCTCTTGTCTTCATGCACAAGATGCCAAGGATCTGGATAGATTATTGTCAGTTTCTAGTTGACCAGTGTAAAGTGACTAGATCACGACGCACATTTGACCGAGCATTGAGAGCACTGCCTATCACTCAGCACAGACGTATTTGGCCTATTTATCTTAAGTTTGTCCGTAAATACCATATTCCTGAGACTGCTGTCAGAGTCTACAGAAGATATTTGAAGTTACAGCCTGAAAACACAGAGGATTATATTGATTATCTCAAGTCTGTAGGATGGTTGGATGAAGCAGCAACTCGTCTTGCTTTCATTGTCAACAAGGAGAAATTTGTATCCAAGGAAGGGAAATCAAATCATCAGCTTTGGCAAGAACTTTGTGACCTTATTTCCAAGAATCCTGACAAGATCAAGAGTCTAAAAGTTGCTGACATTATCCGTGGAGGTTTACGCCGATTTTCTGACAGTTTAGGACAACTTTGGAATTCACTAGCTGACTTCTTTATAAGAAGTGGACACTTTGAAAAGGCAAGAGATGTTTATGAAGAAGCAATTCAAACTGTTATGACAGTGAGAGACTTTGGGCAGGTGTTTGATGCTTATGCACAATTTGAGGAGAGCATGATTAGTGCTAAGATGGAAACAACTTCAGAGATGGGACCTAGTGAGGAAGATGACATTGACTTAGAGCTCAGAATGGCAAGATTTGAACATTTAATGGACAGAAGACCTCTTTTGCTTAGCAGTGTTCTTCTACGTCAAAATCCTCACAATGTCCACGAATGGCATAAAAGAGTCAAACTCTATGAAGGAAAACCCAAAGAAATCATCAACACATACACAGAAGCCGTGCAGACAGTGGATGCTAAGCTAGCGTCAGGCAAACCTCACACCTTGTGGGTGGAGTTTGCCAAGTTTTATGAACAGCACGGTCAACTTGCCGAGGCTCGCGTCATATTTGACAAAGCTACCAAAGTGAATTACCGTAAAGTGGATGACCTGGCCAGCGTGTGGTGTGAGGTTTGTGAGATGGAGATCAGACATGAAAACTACCAACAAGCTCTTGATCTTATGAGAAGAGCTACAGCCATGCCATCAACTAAAACAGACTACTATGATGAGaGTGAAACAGTTCAGAGACGTGTTTACAAGTCGTTGAAGCTTTGGTCAATGTACGCCGACTTGGAGGAGAGCCTGGGAACATTCCAGtcCACGAAAGCTGTATATAATCGTATTCTTGATCTGCGGATTGCAACTCCTCAGATTATCATCAACTTTGCTACTTTCCTGGAAGAACATCGCTACTTTGAAGAAGCATTCAAGGTTTACGAGCGCGGAGTTGCGATGTTCAAATGGCCAAACGTGTTTGACATCTGGAACACCTACCTTACAAAGTTTATTCACAGATATGGTGGCAGTAAACTGGAGCGAGCAAGGGATCTTTTTGAACAAGTTCTCGAGGGCTGTCCGGCTAAATTTGCTAAATctttttattTAATGTACGCCAAGCTTGAAGAGAATCACGGTCTTGCCCGACACGCTATGTCGATATATGAGAGGTCTACAAAAGCCGTATTGCCTGAAGAGCAGTTTGAAATGTTCAACCTGTACATCAAACAAGCCGCGGAGATTTTCGGTGTCACTCACACGCGTGAAATCTACGAGAAAGCCATTGAAGTGCTGCCAGACGAGCAAGCTAGAGAGATGTGCATAAGATTTGCCGATCTTGAGCGTAAACTGGGCGAGATTGACCGAGCTAGAGCTGTGTACATGCACGCTTCACAAATGGCTGATCCGCGGACCACTCCAACATTCTGGAAAGAATGGCATGACTTTGAAGTTCGACATGGAAACGAGGATACATTCCGAGAAATGTTGCGCATCAAAAGAAGCGTACAGGCTCAGTTTAACACACAGGTCAACTTCATGTCCGCACAAATGTTGGCAGCGGCCGCTAGCAAATCCGCCGGAGCAGGAACTGACGAGCCTGTCACTGATGATATGCAGCGGCTTGAACAACAGGCTCAAGCGGTGGCGACAAGCAAAAACGTGAGCGCTAAGTTAAAAGAGAAAGTCTTGTTTGTCAGGAGTGAAACAAGTCACGGAGACACTGAAGATACAGAGCAAGTGGCAAACCCAGAGGAGATCGACATTGATGAGGACGAAGACGAGGATGATAATGACGAGGAAGTTCAAGTTGAGCAGCAATCGGTTCCAAGCAAGGTTAGTCTGACTCACAACTAA

Transcript

ENSSYXT00000009604

CCAGAATTATTCACTTCCTCTCCCCACTAATCTACTTGCACCAGGGGTACTTGCCATTTACATGGGAAAACCGGAAATTCCAGTTGAAATCAAATGGTTCTTGCCATTctgtttgggaagcttcagaaAATATGGCCTGTGATTTGAGGAAGAAGAAGATCTCCCTTATGAAGAGGAAATTATTCGCAGTCCTTATTCTGTGAAATTTTGGATGAGATATATAGAGCACAAGGCTAAAAAGGGCTCCAATACAGCATTGAATCTGCTCTATGAACGTGCTCTCAAGGAACTGCCTGGAAGTTACAAAATTTGGTACCTGTAtctgaaagaaagaagaaaacaagtgaGAGGAAGGCCAATAACAGACCCTGCATATGAGGACATAAATAATGCTTTTGAAAGATCTCTTGTCTTCATGCACAAGATGCCAAGGATCTGGATAGATTATTGTCAGTTTCTAGTTGACCAGTGTAAAGTGACTAGATCACGACGCACATTTGACCGAGCATTGAGAGCACTGCCTATCACTCAGCACAGACGTATTTGGCCTATTTATCTTAAGTTTGTCCGTAAATACCATATTCCTGAGACTGCTGTCAGAGTCTACAGAAGATATTTGAAGTTACAGCCTGAAAACACAGAGGATTATATTGATTATCTCAAGTCTGTAGGATGGTTGGATGAAGCAGCAACTCGTCTTGCTTTCATTGTCAACAAGGAGAAATTTGTATCCAAGGAAGGGAAATCAAATCATCAGCTTTGGCAAGAACTTTGTGACCTTATTTCCAAGAATCCTGACAAGATCAAGAGTCTAAAAGTTGCTGACATTATCCGTGGAGGTTTACGCCGATTTTCTGACAGTTTAGGACAACTTTGGAATTCACTAGCTGACTTCTTTATAAGAAGTGGACACTTTGAAAAGGCAAGAGATGTTTATGAAGAAGCAATTCAAACTGTTATGACAGTGAGAGACTTTGGGCAGGTGTTTGATGCTTATGCACAATTTGAGGAGAGCATGATTAGTGCTAAGATGGAAACAACTTCAGAGATGGGACCTAGTGAGGAAGATGACATTGACTTAGAGCTCAGAATGGCAAGATTTGAACATTTAATGGACAGAAGACCTCTTTTGCTTAGCAGTGTTCTTCTACGTCAAAATCCTCACAATGTCCACGAATGGCATAAAAGAGTCAAACTCTATGAAGGAAAACCCAAAGAAATCATCAACACATACACAGAAGCCGTGCAGACAGTGGATGCTAAGCTAGCGTCAGGCAAACCTCACACCTTGTGGGTGGAGTTTGCCAAGTTTTATGAACAGCACGGTCAACTTGCCGAGGCTCGCGTCATATTTGACAAAGCTACCAAAGTGAATTACCGTAAAGTGGATGACCTGGCCAGCGTGTGGTGTGAGGTTTGTGAGATGGAGATCAGACATGAAAACTACCAACAAGCTCTTGATCTTATGAGAAGAGCTACAGCCATGCCATCAACTAAAACAGACTACTATGATGAGaGTGAAACAGTTCAGAGACGTGTTTACAAGTCGTTGAAGCTTTGGTCAATGTACGCCGACTTGGAGGAGAGCCTGGGAACATTCCAGtcCACGAAAGCTGTATATAATCGTATTCTTGATCTGCGGATTGCAACTCCTCAGATTATCATCAACTTTGCTACTTTCCTGGAAGAACATCGCTACTTTGAAGAAGCATTCAAGGTTTACGAGCGCGGAGTTGCGATGTTCAAATGGCCAAACGTGTTTGACATCTGGAACACCTACCTTACAAAGTTTATTCACAGATATGGTGGCAGTAAACTGGAGCGAGCAAGGGATCTTTTTGAACAAGTTCTCGAGGGCTGTCCGGCTAAATTTGCTAAATctttttattTAATGTACGCCAAGCTTGAAGAGAATCACGGTCTTGCCCGACACGCTATGTCGATATATGAGAGGTCTACAAAAGCCGTATTGCCTGAAGAGCAGTTTGAAATGTTCAACCTGTACATCAAACAAGCCGCGGAGATTTTCGGTGTCACTCACACGCGTGAAATCTACGAGAAAGCCATTGAAGTGCTGCCAGACGAGCAAGCTAGAGAGATGTGCATAAGATTTGCCGATCTTGAGCGTAAACTGGGCGAGATTGACCGAGCTAGAGCTGTGTACATGCACGCTTCACAAATGGCTGATCCGCGGACCACTCCAACATTCTGGAAAGAATGGCATGACTTTGAAGTTCGACATGGAAACGAGGATACATTCCGAGAAATGTTGCGCATCAAAAGAAGCGTACAGGCTCAGTTTAACACACAGGTCAACTTCATGTCCGCACAAATGTTGGCAGCGGCCGCTAGCAAATCCGCCGGAGCAGGAACTGACGAGCCTGTCACTGATGATATGCAGCGGCTTGAACAACAGGCTCAAGCGGTGGCGACAAGCAAAAACGTGAGCGCTAAGTTAAAAGAGAAAGTCTTGTTTGTCAGGAGTGAAACAAGTCACGGAGACACTGAAGATACAGAGCAAGTGGCAAACCCAGAGGAGATCGACATTGATGAGGACGAAGACGAGGATGATAATGACGAGGAAGTTCAAGTTGAGCAGCAATCGGTTCCAAGCAAGGTTAGTCTGACTCACAACTAAGTTATTCACGCGGAAATGTTGATCAGTGTTGGTCTATCAGATCCTAACAGGACAGAGATTTTGCTGATGTGAGATGTTGCTGATAtgtactagttatgcaacgctttcgaatggtataccatggaatatcgcACGAGTCACTTATATTTTCTTAGTATACACACGAGCCATAGAAATTACAGTGGCCAAACACGATCAATGCGACATATATACAGCACTcgatgggaaggttgggtggAATACCGTGGAATATACCACAGCtttcctgcattctgattggctgtattgtAATCAACATATCTAGTTGACGATTTTCTTTATATGAAAGATGATATatctgaactgcggagaaagacatggagacatgattgatcatcgcagctatacacacaacttataCAGTGGTGAAATTAGAGcctgaaaagaaaagtaaaattcaggcctgaaaggAGTCCCGTTCAAGCCTGGCCTTTTTTTAGGCTTTATGCTGCGATAATCAATCATGTCATGAGATTGTCTTTATTTTGGTCTGCCGGGTTATTTTTCTAGAAGGCGGCGTGGCCAAGTGGATTTAAAGTCTAAAGGTCTCTGGTTGTCCTCCCTGCCGCTATGTCAGTGAATTtattctcggtagtcccgagttcaactcctccaccgcgttgtgtaaatagccagctggtcagcctcccaccagttgggattcttaataatTCATGTtctatttgcaatatttgtttaaTCATGTACAGTGTCCCcgattagcacaacagtgctaaatactcATGGCACTTAAAtacaaattatttattatttatttttatttattcaacATGTTACGTCTTGTTGCCGCGTTTACTTTGtccattttcttttcactcgGGTCAGAGTTTATGTTGTGTAAAACATCTCTCGTTTTGCGCTTTACTCGCGTCACGAAAATACAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DCD2	Pre-mRNA-splicing factor SYF1 OS=Mus musculus OX=10090 GN=Xab2 PE=1 SV=1
Q99PK0	Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus OX=10116 GN=Xab2 PE=2 SV=1
Q9HCS7	Pre-mRNA-splicing factor SYF1 OS=Homo sapiens OX=9606 GN=XAB2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005181 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR045075 all species →	Family	Pre-mRNA-splicing factor Syf1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11246 all species →	PRE-MRNA SPLICING FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0000349 all species →	Biological Process	generation of catalytic spliceosome for first transesterification step	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071007 all species →	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12867	SYF1, XAB2; pre-mRNA-splicing factor SYF1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.