Detailed information of ENSSYXP00000009916.1 in Micromussa lordhowensis

Genomic Location: chr3:18720909...18730819
NR annotation: RMX40649.1, hypothetical protein pdam_00009911 [Pocillopora damicornis]
Species Micromussa lordhowensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7ZA24Uracil-DNA glycosylase OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42) OX=326423 GN=ung PE=3 SV=1
Q8R634Uracil-DNA glycosylase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=ung PE=3 SV=1
A8FIM7Uracil-DNA glycosylase OS=Bacillus pumilus (strain SAFR-032) OX=315750 GN=ung PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001188 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03167
all species →
UDGUracil DNA glycosylase superfamilyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002043
all species →
FamilyUracil-DNA glycosylase family 1Interproscan
IPR036895
all species →
Homologous_superfamilyUracil-DNA glycosylase-like domain superfamilyInterproscan
IPR005122
all species →
DomainUracil-DNA glycosylase-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11264
all species →
URACIL-DNA GLYCOSYLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004844
all species →
Molecular Functionuracil DNA N-glycosylase activityInterproscan
GO:0006281
all species →
Biological ProcessDNA repairInterproscan
GO:0006284
all species →
Biological Processbase-excision repairInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005739
all species →
Cellular ComponentmitochondrionInterproscan
GO:0097510
all species →
Biological Processbase-excision repair, AP site formation via deaminated base removalInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSSYXP00000009916.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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