Gene detail

Detailed information of ENSSYXP00000010086.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: NNE99268.1, outer membrane protein assembly factor BamD [Pyrinomonadaceae bacterium]
Species Micromussa lordhowensis · all data for this species · gene families

Sequence

CDS

ENSSYXT00000010704

atgggtgaccgcctgggaataccccgtgttgtagacttttcattttcacgcccctttcatttccatctatACTTTGCGCGTCTTTCAGAAGAAATGAAAGCCGCGGAAGAAGGTGGTGCAGAGATTTTGCACATAGATGTTATGGATGGACAATTTGTTCCAAATATTACGATCGGCTTGCCAGTGGTCAGATCAATCCGAAAAGTTACTGAAATGAAGCTAGATTGCCACCTTATGATTGAAAAGCCCGATCGCTACGCGGTTAAATTCGTGAAAGCGGGCGCCGACATGGTTTCAGTGCACGTCGAAGCCGATATCCATTTGCACAAAACTTTAAATGCTGTTCGCGCGGCTGGAGCGAAATCCGGTGTTGCAATAAACCCGGGAACTTCTTTGGCAACTCTTGAAGAAGTGTTGCCATATTCTGATTTTGTTTTACTAATGTCCGTGAATCCCGGGTTTGGCGGGCAAAAATTTATACCTACGTCAATTCAGAAACTAATACGCCTTCGCAGAATGATACAAGAAAGCGGCTTCGATGTAAGGATTGAGGTTGATGGCGGAATTGACTCGGAAAATATTTCCAAAGTGATTGAGGCAGGCGCTGATTTTATTGTGGCGGGCTCGGCAATATTTGACGGCGGCAAGCCAGTTGAGTCCACGCAGAAAATGATCGATGCTGCTACTGTCTGGGTATCTTTTGTAAGTTTGGTTTTTACTATAATTTTGATCGTGCCGACGATCGCTCAAGTGCGTAAGAGCGACGGCACTCCGTCACAAAGGCTagatattttgcgccaaaagcTAGATATCACCAGACGCTCGCTAAAGAGCAATATTTCGGTAATGAAAAAGGGAGATCGGAAAGGCGACGAACGTCGAGATTCCGAAACTCCGCTTGAGCAATTAGTAGCTCTCGAAAAAAAGACTAAGAATCTATTAAATGAAGTCAACGGACTACGCGGGAAACTGAACCGTTCTGAAGAAATTGAAATCAGCGAGGTTGATCGTCTTGAAGAAGCGGTTTCGCGGTTTCAGTCAAGAGTAGACAAAGTTCTGGTTGAGAATGCAAGACTTCGTGCAAAGCCGGTTTCCAACGTGGGCAAACcgaggaaaaaaaagaagaaaaagaaatttttaGGTCTCTTTGGCGGCGGCGGTGTAGATGAGTACGAAGAGTTGATTGGAGACGTTACTCCTGGACGAGACAGGGAGTTATTTATCGTAGCGACTCGCGAGGTGCGGAAAAGAAATTTTGAAGTTGGAAGACTTCTTTTTCAGACGATTATTTCCACTTACCCGGACTCGCCTTATCTTGCAATGTCGAAGCTTGCCGTTGCCGACAGTTTTTACCTAGAAGGGACAACTAGTGCGCTGATTCAGGCTTCGGTAAGTTATCAAGATTGGCTTACATTTTTTCCTACACACCCTTTAGCCGACCGAGTTTTGCTGAAAATTGCGGAATCGGAAATGCGTCAAATCGGATTGCCGGATAGGGATATTACTCGGGCGAAAAAAGCCGAGCAGCGTTTAAGAGCTCTTCTTCAGAAATATCCGGAGTCTGCGCTTCGTTCACATGTTCAGGAGCGTCTTGATCAAGTTCAAAACCATCTCGGACTGCATAATCTTCACGTTGGGAATTTCTACTACAAGCAGtctgtaaaatataaaaaacgTGGATTGAAAGGAGCACAGTCGAGATATCTTGAGATACTTGAAAAGTATGCGAAGTTTAGCTTTATGGCTGAGACTTTATACAAGCTAGCCGTAACCTACCAGATCGAGGAGGAAACCGATCAAGCCGCAAAGTATTTTCAACGGATTGTCCGAGACTATCCAAACAGCAATTTtgtagaaaaagccaaagaacagCTGAATCTGATTGGCGCCGAAGTGCCCGTGCCTGATCCCAAGCGTGCAAAAACATTGCCGCCCAAGAGAAAGTCCTTTTTAGCTAATTTTAGAGATCAATTTTTAGGCCGGTACCCTATGACAATTGATAAAAACGGCGTGTTAATGACTAAGAAATTTGACAAAGCGAAATTTGAATTAATAGATCAGATCATAGAAAATCAAGGTGATTTAAGAGGCTCTCAAATTCCCCAATCGCTGACAACCATTATCTCAAGTCGTCAACCAAAAGGCAATGAGCGGTAA

Transcript

ENSSYXT00000010704

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O67098	Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpe PE=3 SV=1
Q43157	Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPE PE=1 SV=1
P74061	Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=rpe PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002999 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13525 all species →	YfiO	Outer membrane lipoprotein	Repeat	Interproscan
PF00834 all species →	Ribul_P_3_epim	Ribulose-phosphate 3 epimerase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026019 all species →	Family	Ribulose-phosphate 3-epimerase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000056 all species →	Family	Ribulose-phosphate 3-epimerase-like	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR039565 all species →	Domain	Outer membrane lipoprotein BamD-like	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR017689 all species →	Family	Outer membrane protein assembly factor BamD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11749 all species →	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004750 all species →	Molecular Function	D-ribulose-phosphate 3-epimerase activity	Interproscan
GO:0006098 all species →	Biological Process	pentose-phosphate shunt	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016857 all species →	Molecular Function	racemase and epimerase activity, acting on carbohydrates and derivatives	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009052 all species →	Biological Process	pentose-phosphate shunt, non-oxidative branch	Interproscan
GO:0044262 all species →	Biological Process	obsolete cellular carbohydrate metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000010086.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.