Gene detail

Detailed information of ENSSYXP00000010086.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: NNE99268.1, outer membrane protein assembly factor BamD [Pyrinomonadaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSSYXT00000010704

atgggtgaccgcctgggaataccccgtgttgtagacttttcattttcacgcccctttcatttccatctatACTTTGCGCGTCTTTCAGAAGAAATGAAAGCCGCGGAAGAAGGTGGTGCAGAGATTTTGCACATAGATGTTATGGATGGACAATTTGTTCCAAATATTACGATCGGCTTGCCAGTGGTCAGATCAATCCGAAAAGTTACTGAAATGAAGCTAGATTGCCACCTTATGATTGAAAAGCCCGATCGCTACGCGGTTAAATTCGTGAAAGCGGGCGCCGACATGGTTTCAGTGCACGTCGAAGCCGATATCCATTTGCACAAAACTTTAAATGCTGTTCGCGCGGCTGGAGCGAAATCCGGTGTTGCAATAAACCCGGGAACTTCTTTGGCAACTCTTGAAGAAGTGTTGCCATATTCTGATTTTGTTTTACTAATGTCCGTGAATCCCGGGTTTGGCGGGCAAAAATTTATACCTACGTCAATTCAGAAACTAATACGCCTTCGCAGAATGATACAAGAAAGCGGCTTCGATGTAAGGATTGAGGTTGATGGCGGAATTGACTCGGAAAATATTTCCAAAGTGATTGAGGCAGGCGCTGATTTTATTGTGGCGGGCTCGGCAATATTTGACGGCGGCAAGCCAGTTGAGTCCACGCAGAAAATGATCGATGCTGCTACTGTCTGGGTATCTTTTGTAAGTTTGGTTTTTACTATAATTTTGATCGTGCCGACGATCGCTCAAGTGCGTAAGAGCGACGGCACTCCGTCACAAAGGCTagatattttgcgccaaaagcTAGATATCACCAGACGCTCGCTAAAGAGCAATATTTCGGTAATGAAAAAGGGAGATCGGAAAGGCGACGAACGTCGAGATTCCGAAACTCCGCTTGAGCAATTAGTAGCTCTCGAAAAAAAGACTAAGAATCTATTAAATGAAGTCAACGGACTACGCGGGAAACTGAACCGTTCTGAAGAAATTGAAATCAGCGAGGTTGATCGTCTTGAAGAAGCGGTTTCGCGGTTTCAGTCAAGAGTAGACAAAGTTCTGGTTGAGAATGCAAGACTTCGTGCAAAGCCGGTTTCCAACGTGGGCAAACcgaggaaaaaaaagaagaaaaagaaatttttaGGTCTCTTTGGCGGCGGCGGTGTAGATGAGTACGAAGAGTTGATTGGAGACGTTACTCCTGGACGAGACAGGGAGTTATTTATCGTAGCGACTCGCGAGGTGCGGAAAAGAAATTTTGAAGTTGGAAGACTTCTTTTTCAGACGATTATTTCCACTTACCCGGACTCGCCTTATCTTGCAATGTCGAAGCTTGCCGTTGCCGACAGTTTTTACCTAGAAGGGACAACTAGTGCGCTGATTCAGGCTTCGGTAAGTTATCAAGATTGGCTTACATTTTTTCCTACACACCCTTTAGCCGACCGAGTTTTGCTGAAAATTGCGGAATCGGAAATGCGTCAAATCGGATTGCCGGATAGGGATATTACTCGGGCGAAAAAAGCCGAGCAGCGTTTAAGAGCTCTTCTTCAGAAATATCCGGAGTCTGCGCTTCGTTCACATGTTCAGGAGCGTCTTGATCAAGTTCAAAACCATCTCGGACTGCATAATCTTCACGTTGGGAATTTCTACTACAAGCAGtctgtaaaatataaaaaacgTGGATTGAAAGGAGCACAGTCGAGATATCTTGAGATACTTGAAAAGTATGCGAAGTTTAGCTTTATGGCTGAGACTTTATACAAGCTAGCCGTAACCTACCAGATCGAGGAGGAAACCGATCAAGCCGCAAAGTATTTTCAACGGATTGTCCGAGACTATCCAAACAGCAATTTtgtagaaaaagccaaagaacagCTGAATCTGATTGGCGCCGAAGTGCCCGTGCCTGATCCCAAGCGTGCAAAAACATTGCCGCCCAAGAGAAAGTCCTTTTTAGCTAATTTTAGAGATCAATTTTTAGGCCGGTACCCTATGACAATTGATAAAAACGGCGTGTTAATGACTAAGAAATTTGACAAAGCGAAATTTGAATTAATAGATCAGATCATAGAAAATCAAGGTGATTTAAGAGGCTCTCAAATTCCCCAATCGCTGACAACCATTATCTCAAGTCGTCAACCAAAAGGCAATGAGCGGTAA

Transcript

ENSSYXT00000010704

Protein

Uniprot

Uniprot term	Description
O67098	Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpe PE=3 SV=1
Q43157	Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPE PE=1 SV=1
P74061	Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=rpe PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13525	YfiO	Outer membrane lipoprotein	Repeat	Interproscan
PF00834	Ribul_P_3_epim	Ribulose-phosphate 3 epimerase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026019	Family	Ribulose-phosphate 3-epimerase	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000056	Family	Ribulose-phosphate 3-epimerase-like	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR039565	Domain	Outer membrane lipoprotein BamD-like	Interproscan
IPR011060	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR017689	Family	Outer membrane protein assembly factor BamD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11749	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004750	Molecular Function	D-ribulose-phosphate 3-epimerase activity	Interproscan
GO:0006098	Biological Process	pentose-phosphate shunt	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016857	Molecular Function	racemase and epimerase activity, acting on carbohydrates and derivatives	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0009052	Biological Process	pentose-phosphate shunt, non-oxidative branch	Interproscan
GO:0044262	Biological Process	obsolete cellular carbohydrate metabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan