Gene detail

Detailed information of ENSSYXP00000010960.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: RMX36733.1, hypothetical protein pdam_00025504, partial [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSSYXT00000011612

ATGCACGTGGAGGACGCGTCATCATGCGCGTCTTCACACGTTGCACACCAAGATGGAGGACAGTTGATCGATTTTTTGCGGCCTGCTTCGGCAGGCCCCGCTGTTAGTTTTTCTGATGTTGTCCGACCCAGTCGGCCAGAAAATGTTGTGCCAATAGTTTATGTGCCTGACCAGGAGAATGAGTTGCCGTCCCGACCTTTAACCGCTTTTTTTAACCCGAGATACCGTGTACCCGCAAATGAAGTTTTCGCTGCCTTGAAAGATGCTGGAGTAAACAGTTCTGACATTTCTTGCATCCAACGCCAATCGTCCGGCGAAGTCGTCCTCACCTTCAGATGTGCTCAGTCTAAAGAGAATTTCCtgcaaaaaaatgttcttcAGCTCCGTGGCCAGCCTTTTGCCGTCCAAGATGTGGACCGACCGCTCACGTATCTTCAAGTTTTTGACGCTCCGCACGAAATGCCAGATCCAACTATTATTAACCGCCTCGCCAAATATTGTGATGTTCTGAGTTCCCGCCGTGGCTATTTCCGTGAACCTGGATGGGAAAATGTTCAGGATGGTGTCCGTCATTACCGAGTCCGCATCAAGAGCCCTATCCCCAACTACATGCGCTTCGGGAAAATTTTGATTCACTTCAGGTACGAAGGACAACCTCGCACTTGCCGCCATTGCCATCAAACCGGCCACTACGCGAACGCTTGTCATACCATCATTTGTTATAACTGCGAGCAGACCGGTCACCTGGCTTCCGACTGCCCTGAACGCCTTCTCTGCAATCTGTGTAAATCTCCCGACCACAAAGCCCGTTCCTGTCCCTTTTCCTGGACCCGCGAGCCCGTCCCTGTGAGCGCCGAACCGTCAgacgaaaacaacaacaacaactcgcaCGAAGACGACGAACCTGCCGCGCCGGATAAAATTTCTCTCTCTGAGGACGCTACCCCTCCGCCATCTGGGGACCCTCTTTTCACCGGCCCTGACCCGCCCTCTCAAGTCGATGACGACGATTTCCAATCTCTTGCCGACGAAACTGACGAAACTGACAGCGAAGCCGACTTAACGCTAGATTCTTCAGACTCCGTGGCGCCCGCTCTGCCTGTCAAACCTTCCCTGTCATCACGCAAACCCGCTAAACTGCCTGCCACGATTATCCCTCAACGCCGTGCTACCCAACCGACTCTTGTGACCAGCAAACCTACTACTTCTACCGATGAAACTCCTGTTTTGGATGTAACTATGACTGATGAAACCGATGAGACTGATGTTATTTTGAAACGCAAGACGGCCGAGCGTTCAAGgacaaacaaacacaagaaGCAAACCCTCGCAGCTCGCCCCGCGGCGATTGATTCTTTACGTGCCAAATGGCGAGGAAAAAGTTTTTGGTCGCCCGCTCTTGGCAAACAAGGCGGAGTGGCTATTTTAGTATCTGAAAATACGGATTTTAAATTGTCCCAATGGATGAGAGATTCCTCTGGCAGAATTGCTAGTGTTTTAGCCCTTTCGGGCGACCAACGGTATAATTTTGTCAACATTTACGCTCCTACAAACCCAACTGAGCGGCGTAGATTTTTTGACACTTTACcagattatttttttcctcattCTAATGTGATTGTGGCAGGGGATTTTAATTGCATTGAGAGCGAACGGGACAAATTTGGCGGCAATGTGACCATTTCCTCTGATTTGCAAGATTTACACGATATTTATCATCTTGTTGACATTTGGCGTAAACTTCACGGTCGGCAAACCCAGTGCACTTGGTTTAACTCGTTAAAGACGATCGGTTCACGgttagataaattttttatcgCTCAAAATCTCGTTTCACATGTGTTAAGCTGTGAAATTATCCCGTGCGTGTTTTCTGACCACGACTCGGTTAATTTAATGTTGGATCTCGGTGATGATAACTGGCTCCCCCGGTTATCTAAATTAGAAACTAATCTTAACCTTTGGAAATCACGCTCTCTCTCCCTGGTAGGCAAATCATTGATTATTAATGTTTTAGGTGCTAGCAAATTCTGGTTTCTCGCCAAGATCTTAACCGTCCCTCACTGGGTCGAGACTCGTTTCAAGACACTAGTATATCGCTTCTTGTGGAATTCTAAGATTGAGACTGTAAGTCGACAGACCCTTTCGACACCAGTAAAGGAAGGTGGTCTGGGTATACTCGATTTTTCGTCGAAAAATAAGGCCCTTAAGGCTTCTCTTGTTTTGAATATTGCTACTCGTTCTGCCACTCAGGATTTTTTTCTGCTCAAGTATTTTATAGGTTCACAACTTGCTAGGCTTCGGCCAGAGTGGTCCCACTTACGGGACAACTCTGGCCCCAGTGCCCTGACCCCCACTAGTTTTTACAAGGGTTCTCTCAAGTCTATAACAGACTTAGAGAGTCTCATTACTGCACAGTCTAATTTCAAGTATACCTCTAAGAGTTGTTATCTTAAGTTCCTTCAGGTAACAGTGACCGCTCCTCTCCTACCTCATCGTTGGAGAGCTTTTCTTGGCCCTGGGCTTACCCCCCAGGCTCACTGGCCCAGTGTCCGAGATAGTTTTACTGAGAATTATAAAAATGATTTGGCATGGCTCATCACCCTGAGGGGGGTCAAGGTTCGCGACTCCCTCCGCTCGTGGGGCTACATTGCTACCGATGCTTGTGCCCACTGTCATAGGAAAGAAACTATTGATCACTGTTTCCTGAATTGTAGGAGGGCCAGGGAGACCTGGAACTTCTTTCTTCCCACCCTCTCTGCCCTCTTGCATATCCCTTTCCTAGCTAATGTTCTGACTGTTTTCTTTTATCAATGGCCTCCCGCTGGCGATAAGAATGATACACTAGCGCGCTATTTAGTCAAAAGCATCCTCTATGGCCTTTGGGTCTTTCGTAATAAAGCAACTTTCCACAATGGCACCGAGACCTCTCGGGCCATCGTTAAGTACATTTCTAATGACATAAAGGTCCGCATCAAAACGGACTTCTCCCGAGTGCCCATTCAGACCTTCTCCACTCTGTGGGGGGATCCTAGCTTATGTGAAGTGGTTAATTCTAAACTAGAAATCAAGTTTTAA

Transcript

ENSSYXT00000011612

Protein

Uniprot

Uniprot term	Description
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF13966	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR026960	Domain	Reverse transcriptase zinc-binding domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR042509	Family	Zinc finger CCHC domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22639	GAG-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0002218	Biological Process	activation of innate immune response	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan