Detailed information of ENSSYXP00000012672.1 in Micromussa lordhowensis

Genomic Location: chr4:30196804...30202467
NR annotation: XP_020625495.1, UPF0317 protein C14orf159, mitochondrial-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5KY48Putative hydro-lyase GK2103 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=GK2103 PE=3 SV=1
Q65NA8Putative hydro-lyase BLi00500/BL02808 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi00500 PE=3 SV=1
A7Z1F3Putative hydro-lyase RBAM_004300 OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42) OX=326423 GN=RBAM_004300 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010807 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07286
all species →
D-Glu_cyclaseD-glutamate cyclaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009906
all species →
FamilyD-glutamate cyclaseInterproscan
IPR038021
all species →
Homologous_superfamilyPutative hydro-lyaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32022
all species →
D-GLUTAMATE CYCLASE, MITOCHONDRIALInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006536
all species →
Biological Processglutamate metabolic processInterproscan
GO:0047820
all species →
Molecular FunctionD-glutamate cyclase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22210DGLUCY; D-glutamate cyclaseEC:4.2.1.48
D-Amino acid metabolismko00470deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP