Gene detail

Detailed information of ENSSYXP00000012876.1 in Micromussa lordhowensis

Genomic Location: chr4:893512...902713
NR annotation: XP_020630450.1, uncharacterized protein LOC110067464 [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000013604

ATGAGAACCGTCAAATGTGTGCTGGTGGGAGACGAAAACGTCGACAAACGAGAATTATTCATCAAGTACGTGAACTTGTTGAACTCCGAGGCCGAACCAGCGACAGAAACAGAGGAACATGAACATCCTAACACGGCAAACCTGCTTCATGGCAACGAACCCACCGATGTTTTTGAAAATGGCGATCTTCCTCAAGTTAATATCAACGAAGGAGTTGATGGCGAAGGAAGTCACAACAATCATCCAAATTTCAGGGTAATCCACCATCGCGATTCCGAGAACGCCAGTGTATCGAGCGTAGACCAGGACTCTATCAGCCAGTGGTGTGGCGCGGTTACCGTAGCAGGCAAGCATTACTTTTTGGACCTTCGTGACGCTCACTGCCAGGAGGCGTTTGACAGCATCCGTCCAGAGGTCTACAATGACACGGACGTTttccttgtttgtttttctgtcgTACGGTCAAGCTCTTGGGAGAACGCACTGAACAAGTGGATACCAGAAATTCAACACTACTGTCCAGTTACCCCGTTCATACTAATAGGCACCCAGACTGAATGGCGAGAGTTGTGGGACGAGAAAGACGCGTCGAAAAAACCGGTTTTCTCGGTTACAGGAACCGGTTATGCCCAGCAGGTGGGCGCTGTTAAGTATTTAGAATTCGCCACTGGGGACGATCACGTGCGAGAGATTTTCAATGCTGCTGTGTTGGTCAGCATCATGGACCGAATGGCACTTTCTACATTTCATCCCGATTTTGACAAAGATGGCTTTACTTTGCTGcacaaagccgcaaaactcAATCATATTCCTTCTCTGGAAGCTCTCGTGGACTCCATAGATGTGAATGCCAAGGACAAAGATTTACAAACTGCGTTGGATATAGCGGTGAAGGAAAACAGTTTAAATGCAATAAGATTTCTTCTCGAAAGCGGCTGTGAATTCCCCAACCCGCCAGACTCTTGGAAGAAATGCTGCGATTTCTGGGTCAGTAACGAAGGTGAAGATTCTGAGCGCGTCGTGAATAGCGACATTGCCGAGTTTACCCGACAACTGACATTTTTTTACACGACCGCATCACCCCGCCCACTCGCAAGAAttcttctgattggtcaaaacggAACGGATGTGGCGAAGTTTGTGAACGAGACCGTGCCGATCTTGCCAGTAAGATCGCTAACCATTGTGAATTCAGAGGGACCCGCTCTGTTTGACTTTTCGCGTGTCCAGTCTTGTTTAGAGTCCTTAACGATAACAAACTGTGATTTTGGTTCTGCGGAGTTGCCAGGCACCTTGTACACAGTGGCAAGTATCAAGAGCTTGAGTGTGGTTAAATCAGGAGTATCACGGCTTTCTGAACAACTTGGCGAGCTGAAAAGTCTACAGCGCCTGCGTTTGAGTGGGAACAAGATTCGGAAGCTCCCCGACACGATCTCCCGGTTGCAGAAGTTGAAGTTTGCTCATTGTGATCGTAATGCGCTCGATAATCTTCCCGATACTCTCGGTTGTTTGGGCTCGCTTGAGAGCCTGGATTTCACTCATAACAAATTGGAGAAACTGTCGGCGTCACTAGGCCTGCTGACTAATTTGCGAAATCTTTGGTTCGCTAGAAATCGTCTGAAGTTTCCGCCCGCTCACATCCTCAACAAAGGAACTGAGAGCATTTTAGAGTTTCTCAGTGACTTCTTAGACGATCCAGTGGCCAACAATCAAATCAAAATGGTTCTCGTGGGAGGAAGCGAGGTGGGCAAGAGCGCACTAGTGAAGGCTCTAAGTCACTCCAAAGACTGGCGAATAAGCGGAGTTGGTGCGATTCCCAAGACAGATGGGGTCCACATCTCCTCCATAAATCTAATGCATTCCAAATTGAAAGTATTTGACTTGGCAGGGGACGAAGCCTTATTCAGCTCGCATCACTTCTTCCTGTCAGAGAACACTCTTTACCAAGTCGTTTTTGATATGAGCGCGTACACGGTCAGCAAGACTTCGATGCAAATAAACCAGCTTAGCAGGTTAGAACTTTGGCTTCAGGTTATCTTCTCTAGAGCTCCAAACTCTCACGTGCTTCTCGTCGGTACTCACGCCGACGACCCGAAAATCACCGACGACATACGAACGCGCATTCGTCGAGACATCGACACGCTCTTGAGCAAGTATCGTCGTGAGCATAGACGACAGTTTGAAGGAGAAGCTGTGCCTCAGTGTGGCCTTTGCGAAGGGACCCTAATCAGCGAGGGCTCAACTACTGGCTCGTTGTTTTATGTTCAGGACCAAGGACCCCCTCATGTCCCTGGTGTCGCGCCAGAGTCCTGCATTCCTCACGTGGTGGGTTACTATGAAGTTAGCTGTCAAGGCCAGTTTCCCAAAAACTTCCTCAGTTCTAAGAATCGGAGCCTGCAGAAGTTCAAGGTGGGAGTGGGTTCCAGCGCTTACATTCTTCTCAGCACGAAAGTCAGTTCCCGCATCCCGCAGAAATGCTTGTACGTGCGGGACAGGATACACGAAATGTGCAACGCAGAGAACGAATTGATGAACTGGCCGCTTCTTACTTACGACCGTCTGCGCGAGATTGCGCACGGTTGCGGAGTAAAGCAGGACTTCAAGCTTAAAGCTCTCATGTCGTATTTTCATTCTCAAGGAGAAATCCTGTGGTACGAAGATATGCCAGGCGTTGGCGATGTGATCTTTATTGATCCTGCCTGGCTGTCCAAACAGATGTGTCTTCTCGTCCGCTCGCCTTCTGGCGCCAGTTCAGGACTCGACGGGATATTGCGGATTGACAACCTGGCTAAGACTTGGCCTGACGTTCCCGAAGGACAGCGGTTTTCTATGCTGACTTTGTTGAGAAATCTCGGATTAAGCGTCCCTCTTTCCGAGACAGAAGATCTTGTTCCTTTCCAGCTTCCCATCGGCCGACCGGACAAGGACGCATGGTCAAGACAGCCTTCGGAAGATCAGCGGCAGATCAGCTGTGAGTTTCATTTCAGTTTTCTTCCTCCAACTTTCTTTAGTGACCTCACAGTTGCCATTAACAGGCGGAAGCTGCCCAATAGCTTCGAGATAGAACCAACATTCTACCGCTTCCACATGGTCTTTGCGACCACGTCGATCGCCAGCATAGGTTGCTCGCTCCACTGTAAAGAAATCTCAGCTCATCCTTTGGCAGAGAACCTGGACGTGCATCGGGTTAGCATCGAAGGTGTCCCGTACGAGAACAAGTTGAAGGTGATCATACGAGGAAAATTTCCTTGCTGCGTTCTTCCTGATGTGAGAGCTGCGATCAAGACTGTAGTGGACACGCGCTATCCTGGAATACGCTACGTCAGACGGATTGTATGCTCCGCTTGTGAACTCGCAGCGTTCAAGAATCCCGCGCTTCTCAAAGAACTCGTTAGCGACAGAGGTAACTGTTGTTCTTGGGGGCACATTCTAGGGACCGAGGCGGCAATCATGGCTGGCGATCTACCTGTCGAGCCTGTTGCTCCTGAATTACCAACGAAAGGAGCTGTCAGGTCGGGGGTGTTTTTCGACGAGGCTGGTCAAATCCTAGATGACTGCTACTGCCCGAGGCTTCTTGCAGTCTTTCCTATCGGCTTTCACAGCGCGCCCTTTAAGAAGCGCCTTCGTGTCAACTCGCCAATTAAAGATGGCTATTCAGTACATTTCTTGTGCGAATGTCCCGGATATTGGCACTTAACTGAGGGTCCAGGCTTCCGCATACCAAACATCCGGGCATTCCTGGAGGTCTTCGGGGCGCGTGCTTGCAAGCTCTTGAAACTCGCTTTCATGTTGCGCGAGGATGACGCTGAGGACGGGTCCAGTGAATCACGTGTTCCGGTGAAGATCGTCTTGGGTGATGCCACGTTTCGTGACATCCTCATCACGGATATCCAAGATTTGCTTGAACATTACTTCGTGGTATTTCCTGAGCTTAAGAACAGCTACATGGGTTTCATGCAAGAGGATTTAGATTTCATACAGAGCTACCAAGGAGTCAGCCGTGGTAAGATGTGCAAACTGCTGGAGATCTCACCAGACTGGTGGAGACTCGGTCCACTGGTCTGTACGTACAATAACCGCACCAATGAACATCTCTGGCTCTGTGAGAAGCATGCGGTTGATGTCAAAGATGTTAAAGTCATACGCCTCCTGGGGGCTGGCGGGTTCGGTTCTGTCTTCGAAGCTATGCATAACAACTGCAAAGTAGCCTTGAAGAAATTTCACACCAACACTCGCAATAAGAAAGCTGCAATGCAGAGCTTTGAGGCCGAGGTGCATCACGAAGTCTTGTCTCTCAAGCATCCTCACATCGTCCGTGTTTTGGCAGCAAACACCGCGAACAGCTTGGAAGACCAGCCTTGTATCATCATGGAGTTCGTAAGCACTAGAAACCTTCAACATGTACTCGACGACTCCGAAGAAAAGATCGATTTTAAACGACGGGTTAAATTTGCATACGAGGTGGCTCTGGCGCTGGAATACGTGCATCACAATAAGATCGCGCATCTCGACCTAAAACCTGCCAATGTTCTTATTGCACAGGATGGTAGCTGTAAACTCGCCGACTTCGGGTGTTGTCAGATCATCGAGGAAAGACCCAACACCCCCTCCAGATCGTACCTCACCGGAACTTTTGCCTACCGGGCACCGGAGCTACTTAAAGGAGAAAGACCAACTTTTAAGGCTGATGTTTTTTCGCTCGGGATCTGCTTGTGGCAATTCTGGACACGAGAAATCCCGTACAAGCTGCAGAATCACCAGATTGTGATCTTTCGAGTTGTGGCCTGCAATTTGCGTCCGGAGATTCCAGAGGGAAGTGACGTTGACAACCGGTACAGGgaactgatgacgtcatcatgGTCCGGTAATCCTAATGATCGCCCGGCCATGTCAGAAGTCGTGATCTTGTTGAAAGGTCTCATTCAGCACAAGGGTGGATCCAGGGTTGGCTTGTACGTCGAGGGAATCAACGGGGTATGTCTAGACGGTTGCTATCTGAGAATTGGTGCCTATAATTGA

Transcript

ENSSYXT00000013604

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GRC0	Serine/threonine-protein kinase mos OS=Patiria pectinifera OX=7594 GN=mos PE=1 SV=1
P12965	Serine/threonine-protein kinase mos OS=Xenopus laevis OX=8355 GN=mos PE=2 SV=1
P50118	Proto-oncogene serine/threonine-protein kinase mos OS=Sus scrofa OX=9823 GN=MOS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003304 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050167 all species →	Family	Serine/threonine-protein kinase	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257 all species →	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0043410 all species →	Biological Process	positive regulation of MAPK cascade	Interproscan
GO:1902103 all species →	Biological Process	negative regulation of metaphase/anaphase transition of meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000012876.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →