Detailed information of ENSSYXP00000015479.1 in Micromussa lordhowensis

Genomic Location: chr4:1716586...1741237
NR annotation: PFX23871.1, Segment polarity protein dishevelled-like DVL-3 [Stylophora pistillata]
Species Micromussa lordhowensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DKE2Segment polarity protein dishevelled homolog DVL-3 OS=Xenopus laevis OX=8355 GN=dvl3 PE=2 SV=1
B1WAP7Segment polarity protein dishevelled homolog DVL-3 OS=Xenopus tropicalis OX=8364 GN=dvl3 PE=2 SV=1
Q92997Segment polarity protein dishevelled homolog DVL-3 OS=Homo sapiens OX=9606 GN=DVL3 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003086 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12316
all species →
Dsh_CSegment polarity protein dishevelled (Dsh) C terminalFamilyInterproscan
PF00778
all species →
DIXDIX domainFamilyInterproscan
PF00595
all species →
PDZPDZ domainDomainInterproscan
PF02377
all species →
DishevelledDishevelled specific domainFamilyInterproscan
PF00610
all species →
DEPDomain found in Dishevelled, Egl-10, and Pleckstrin (DEP)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036034
all species →
Homologous_superfamilyPDZ superfamilyInterproscan
IPR024580
all species →
DomainDishevelled C-terminalInterproscan
IPR036388
all species →
Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR001158
all species →
DomainDIX domainInterproscan
IPR001478
all species →
DomainPDZ domainInterproscan
IPR038207
all species →
Homologous_superfamilyDIX domain superfamilyInterproscan
IPR036390
all species →
Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR000591
all species →
DomainDEP domainInterproscan
IPR003351
all species →
DomainDishevelled protein domainInterproscan
IPR029071
all species →
Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR015506
all species →
FamilyDishevelled-related proteinInterproscan
IPR008339
all species →
FamilyDishevelled familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10878
all species →
SEGMENT POLARITY PROTEIN DISHEVELLEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0035556
all species →
Biological Processintracellular signal transductionInterproscan
GO:0016055
all species →
Biological ProcessWnt signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02353DVL; segment polarity protein dishevelled-Cushing syndromeko04934deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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