Gene detail

Detailed information of ENSSYXP00000015509.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: XP_020605597.1, peptidyl-prolyl cis-trans isomerase-like 4 isoform X1 [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Sequence

CDS

Transcript

ENSSYXT00000016344

TTTTCCCATTTGAACCCATGTCTGGAAAGTAGAAAGAACTGGACTTAGATTTACTGCTTGTTGTTTGAGGTTTTGGTCAAGGAAAGATGTCTGTTCTTCTTGAAACCACTTTGGGAGACATCGTGATTGATTTGTTCACAGATGAAAGACCGCGAGCGTGtcttaactttttaaaattgtgcAAGATAAAGTATTATAACTATTGCTTGTTTCATTCTGTGCAGCCAAACTTTCTGGCTCAGACGGGGGACCCAACTGGTCGTGGCACTGGAGGAGAATCTGTTTTCAGGTTTCTTTATGGAGATCAAGCTAAGTTCTTTGAAGCAGAAACCAAACCTCGTATAAAGCATAAAAAGAGAGGGACTGTGTCCATGGCAAACAATGGAGATAACTTGCATGGTTCTCAATTTTTCATCACCCTGGGAGATGACCTTGATTACCTGGATGGTGTTCATACCGTGTTTGCTGAAGTTGTTGAGGGATTTGATGTCCTGGACAAACTGAATGATGCCATCTGTGATAATGATAACAAACCTTACCAGGACATCAGAATAAACCACACTGTTATACTTGACGATCCCTTTGACGATCCAAGTGGCCTAAAAATACCTGATCGGTCTCCGGAACCGACTAAAGAACAGCTTGATAGTGGTCGCATTGGAGCTGACGAGGAGATAGATGACACCAAGGGTAAAACCATGGAGGAAATTGATGAGATGATTGAAGAAAGAGAGCTCAAGGCTGGCACACAGATCCTTGAAATGGTTGGTGATATTCCCGATGCCGATGTTAAACCCCCTGATAATGTTCTTTTTGTCTGTAAATTGAATCCTGTCACTCAAGATCAAGACCTGGAGATAATATTTTCAAGATTTGGACCCATTAAAAGCTGTGAAGTCATACGGGACCAGAAGAGTGGAGAGTCACTGCAGTATGCTTTCATTGAGTTTGAGAATgtGGAAGACTGTGAGCGTGCTTACTTTAAAATGGACAATGTACTCATTGATGATCGTCGAATTCATGTTGATTTTTCACAGTCAGTTGCAAAAGTCCAGTTGCAAAAGCAGGGTACTAAACCAGTCTTCCCAAGCAGAAGTGACAAGGACAAACCCAAATTCGCTGTCAAAGGACACAAAGAAACAACTGGATATGATCTGGTGTTTGATGATGATGGACACAACAAGAGGAAATCTGAACACAAACTAAAGAAGCAAAAGCATGGCAGCCACAGCGATGAAAAAGAAAGGAAGATGAAGCACAGTCATGATGATGATCGCAAAAGAAAAAGTGAACAAGATGAGAAAGAGAAAGACCGAAGGCGGGAAAGAAAGGCACATTACAGCAGTGGTGAAGATGAACCAAAGGAAAGAGGAACGAGAGATAAAAGGGAGAGACAAAGGAGCTCCAGTGGCAGCGAGGATGACGAGAGAATAAATAGAAAGAGAAAAAGTCAAGCAGATGATCACTCAAGAAGTCATAGATACAGTGAGGAAAAGCGTCAAACAGAACAACAGGCAAAGTCAAGGGATCACAAACACAGAAGAGACAGGGAACATTCtccaagaaagaaagaaaaatattcaAAACATGATCAAGACAAACGTAGACATTCTGAAGGACACAAAAGCAAGCACTCTTCACATGACCACAAACATCATTCAAGTCATAGACACTAAGCTTGAAGCATGGAATTGTGATTAGTAGTGGAACAATCTCTTGTCGTGCTTGTGAAGTAAGCAAAATATGCAAACAAGAGCATGGCTCTACAGACAGTCTGCAAGCCTCAAGAGGATTTATGAAAATAATTATCAAAGAACAAGATCTGTGGAATTTGGACACGTCACTACTCTGTGTCTGGAAGGTTCTTGTAGGTTGTGGTTTTGGAACAAAAGAACAGCGATTTGAATGGATTGAGTAAAAGAGTAGGACTTACAAGGAATGTGTTTTATTCCTCCATAGACGACGTACATTAATTTATTTAGAAGTGAACTTTTAAATTATGCACATGGTGGGCATTAACAAGTACATTATTTTGAGGATCTCAACATTACCATAACAGGGCTGCCACTGGTCAGGGAACAGTctgggaattttattttgagtcaagaaaaattgacattttgaagaaaagttagggaaaattgaaatattttacatgtaacttgGCTGATTTAAGGTGACTTATTACAGTTTTGATGAATTATAGCCCAACTTCTaactttttgaaaaatgtttcaagatgtttttcctttctatatTTACCATTTGCATAAGTGCTTTACCATTTTAtgtgaaacttaaaaaaattaagctaatttaaatgtcaacaaatggccaaaataaaTGACCAAGTACctaaggagagactgggcactaggcGATTAAATggagtttttctcaaaatctacctgTATGACCTCACCTCAGcatttcaggaattagaaattggctcagataaaataaaaatctgtaaagTAGATTTTTCGCAAACTAAGGAAATGTGAgatcaaaaatagctcaaaatctgtaagacagatttttttttaattttggttcTAAATGCAATTCATCCCCACAaatcaactgtgaaaattttGTCATAGGTTGTACGGTAGTTTTTCGAGCAAACATCAATCAAAGACTGGCTTTCACCACCTTTGATGGGAATTGAATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CXG3	Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus OX=10090 GN=Ppil4 PE=1 SV=2
Q8WUA2	Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens OX=9606 GN=PPIL4 PE=1 SV=1
G5EEW6	Peptidyl-prolyl cis-trans isomerase sig-7 OS=Caenorhabditis elegans OX=6239 GN=sig-7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004998 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00160 all species →	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029000 all species →	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR002130 all species →	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035538 all species →	Domain	PPIL4-like, cyclophilin domain	Interproscan
IPR035542 all species →	Family	Cyclophilin-RNA interacting protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45843 all species →	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000413 all species →	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12735	PPIL4; peptidyl-prolyl cis-trans isomerase-like 4	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.