Gene detail

Detailed information of ENSSYXP00000016789.1 in Micromussa lordhowensis

Genomic Location: chr6:32329472...32352684
NR annotation: PFX25178.1, Cation channel sperm-associated protein subunit gamma [Stylophora pistillata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000017640

ATGACGGACTGCAAGTACTTCGAGATCTTCTTCCTCCTCATGGTCAGCTGCACGCTTTGTGTTTCGTCAAATATGCGATGTTCTTGGGTGTTTGATGCAGTGGAGAAAGAAAATCTGTCGAAGGTGGCGTCTGTCATAGTTTCAAGTGGACAGTATTTCTTAAGAATAAGAGTAAAGTGCGACGATAAGGTAATGGTGAGGTCGCTGGTATTGACAAGTGTCAATCCTGTCATAAGACTTGAGTCTGAGTCATTTGGGTTAAGCCATCACAATACACAAAGATATTCAATTCTAATGACATTGTCACTGATAGAAATGGGAAATCAGGAAAGTTGTGGATGTCTTTTAAGAAATAAAAGCAGTGGAAGTAGCAGATTCACTGTACACTTGGATGGGTATCACCTACTAGTCAATAACACCATTCGTAACAGACTCGGAGATGAAGTTCAACAGCTGTCATCAGTTTCACAGGAGACACCTATTGGTTGTGTTCCAAACTTTAGCCCTATATGTGTCATCGGATCCTCAGAAATGTCAAATCACATCATTTACACTGCCTCAGAATTCGAAAAGATGCAATTTTTGAAGATTAAATTTCAGGATTCAGTTCAAAATGAGTGTGCATCACAAAGATCGCAATCATCTGTGCTAGTCAAGGGTGCACTGTCTCTAACAGACCGGATTCTGCTCAATTCTGGTGTGAATTATAGACTTGTGTTCCCTGGGTGTGTCAGCCATGTGGTGAGCCCCGCCCAGTCATCAGTTCACAAAGTCACAGTTTTGGGTTTTGGAGAAGAACAAGATAAAGAAAAGGTTTTTGTGGCTTTGCCAGTAAAAGgGACACCCTTAAACTTTGTTGAGCTGAGGGATTCAAGGGATCACAATTCTTGTCAATTTTTAAAGGCATTGCTTGAGAATACAGGTAGTTATCCATGCCAGGTAGTATCTGGAAGTATTAGTGGTGTGAAGGCTCAGTCATTTGTTATCTTGGTAATGCTGAAGACTCCTCATGCAGAGACATTTCATTTGGTGCAATATGAAGGTACCATTGTTGGAAATTGGACAGCCCTATTTCATTTCCCAACTTCTCTTGATTTGTTGGAAACTGACCGTGATGACTGGGAGAGAATAGAGTCCACGTTTAGTGCTGACGATTCAAAAGTTGCAACATTGTCTCTAACTGGCTTGTCATTCACGGCAGTGGTCTGTGGCAGTTTGTTTATTTGGGGAAATGTTCTGCTTTTCAGtccAGATGGTGGAATCTCCTTTCACTGGCTGACTGGTTTTCCTGGAAATTCAACGATAATGGTTTTCACTTCCTCTGAGTCTGATGGAACTTTTGCATTCCTTACAGACAATCAAGAGGTCTGGGTCGGCCAAGGAGGCTCGGCTAAGGTTCAACGCCTTAAAGGCAGTTTAGGTAAACAAGCACTCGCTCCAGGCCTCCATGCCCAGAACAGTTCATTTGTTCTATCGATATTCTTTGACTCAGCTAGAAGGTTACAGAAGATTGTAGTCGAGGGAAGAGACGATGGTGGAGAGAGAAAGTGTATCGTTCGAGAGGAAATTCCCGTTGGCAGGATCATCTCTCGGCAACTGTTCGCTCTGACTCAAGAAGAAAATGTAAGAAATTATAAAAACGCCACGACCAAGTCAACTTCTTGCCTCCAAAAACCCTCAAACAATCGGAATAAGCTGAACATTGTAGATCGCGCATGTCCTTTTGCGCGGATCACCTTTGAGGCTAAACACGATGTGTTGTATACAAGAAAGTGCTTTTACAAATTGGAACCGACTATCCAGTGGGACGGCGGTCTCATTCAGAAGAGCACCGCCCTTTATGAATACTTCAATAAAGTGAACAAGGCTATTGACGCTGACTGCAGCGGCATAAGTCAAGATAGGAGACGGACCACGAAGGATTTTTTACCGGATCTGATCCAGCTTGGACGATCCGAGCGGTATTCGTTTGTGTTTTATCTTTACCTGGACTACGATTACCAACTTGAAACCAACACGCACCCGTGGAGTCTCACTCATCTCCAGGCCTCGCTTCGTGTGTCAGACGCCACGGTTCTGAAAATGACGTCACTCAGGACAGAACTTATTCCCCAAAAAGCAGTTAAATATGCGATTTGGAATTCTGGTTTGTCCTGTAGTACCACTTATGGCAGTATGGGCTCTCTACAGGGTTCTTATGCAATGGCTGTGCTTCTCGGGTGTCCCGCGGGTCGCAAGGTCGTATTTGATCTCGAGGCCTCGAAGGCCGCTTCGGGCAAAGAGCATTTCTGCTCTCCCGTTCATggtgtaccgtgtttctatttttaCCGAGATTTTCTTCCAGTGTTCAAAGTATTGGACTTGGCCACAGGGCAAATAACCCAGTTTCGTGGAAAATATGGACTGAAGATTGTAGGAGGAGGACCGACCTACCAGTCAATAACAGATTACTCACAGGAAGAACAAACGAAATACAACTACCAAACTACAAGTTCCATGGCCTCTTTGATCTGGGGATCCAAATTAAAGACGCTGGGAGATATCCCTGTATTTGACAGTGAAACAAATGGCATAAGCTGGTTGTGCGGTACACAGAGTCCTTGTGCTGATATTGGCCCAAACTTTCCTGGAAATGCTGAGtactatttcaaattggagtttTCAAACAGGATCGTGGATGCCAATTCTTCAAACTGTGACTTTACAATCCGATTCCTGATACGAGTTCATGGCTTGCCACCAGGCTCATTTAACCCGTCCTCTGTTATTGTTCTGGCGAAGACAGTTGTACAAAAGCTTCACGCTGTAACTCAGGTCAAAAGTTGTATCGGGCGGCCTTGGTGGGAAAAGAGAACAATGAAGGCTCTAGGATTTAGCAGATTGCACCAAACTATAATTCACAAGAACATACCGACAGTAAACGGCTCCTTACAATCGGTAAAACACCTACTGGAGATCAAACCTGTAGAAATTGTTGAAGAAGATCCAACGGAGGGGCAAAGAAATGGACAAGAAGGATTGTTTCTCAGGCAAAACGGAAACTTCCATCTGAACAAGTTCAAAAGATTTCTTGAAAATAACCCCGATATGAAAGAAATGATCTACAAGAGAAGGAAGCAGGCCATTTGGGAAAGGCGAAGGAAATGA

Transcript

ENSSYXT00000017640

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZRH7	Cation channel sperm-associated auxiliary subunit gamma OS=Homo sapiens OX=9606 GN=CATSPERG PE=1 SV=3
B1I1L7	Large ribosomal subunit protein uL30 OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=rpmD PE=3 SV=2
Q5L8C7	Large ribosomal subunit protein uL30 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=rpmD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002905 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00327 all species →	Ribosomal_L30	Ribosomal protein L30p/L7e	Domain	Interproscan
PF15064 all species →	CATSPERG	Cation channel sperm-associated protein subunit gamma	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036919 all species →	Homologous_superfamily	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Interproscan
IPR016082 all species →	Domain	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Interproscan
IPR005996 all species →	Family	Large ribosomal subunit protein uL30, bacterial-type	Interproscan
IPR028246 all species →	Family	Cation channel sperm-associated auxiliary subunit gamma	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14327 all species →	CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT GAMMA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0036128 all species →	Cellular Component	CatSper complex	Interproscan
GO:0097228 all species →	Cellular Component	sperm principal piece	Interproscan
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000016789.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.