Gene detail

Detailed information of ENSSYXP00000017074.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: PFX24265.1, Polyribonucleotide nucleotidyltransferase 1, mitochondrial [Stylophora pistillata]
Species Micromussa lordhowensis · all data for this species · gene families

Sequence

CDS

ENSSYXT00000017953

ATGGAAGAGGTTTGCCCCTGTTGGTTGATTATAAAGAAAAGGCAGCTGCTGGGGGACAGATTCCCAGGAACTTCTTTAGGAAAGATGCAAGAATGTCTGATAGAGAAACTCTTGTTAGCAGACGTATGGGTCACGAGCAGTTTGTGGGCAGCTGATGGACTCCACGATCCTGATATTGCTGCCATAAATGGAGccTCTGCAGCACTTGCAGTTTCTGATATTCCTTGGAGTGGTCCTGTAGGTGCGGTGAGAGTAGGAGAGATTGATGGAGCGTTTGTCATCAATCCCACGTGGTCAGAGCTTGACAGCAGCAAGCTGAACCTTGTTATTGCATGCAGTGAAAGGAAAGTTGTGATGGTGGAAGCATTTGCCCAAGAAGTGAGTTCTGAGAGGTTTTGTGAAGCTCTTAGGTTTGGATTCAAAGAGTGCCAACCTATAATCAAAGCTTTGCGTGATTTGCAAAGCCAAGGTGGCAAGAAAAAGAGAACTTGTGAAGTTCTTGACATGCCTGTAGAAGTGCTGGATGCAGTGAAGAGACATTCAGTAGAGCAACTTGATAGGATATTTTCAAACTTCACTTACTCAAAGATGGAACGTGACAGAGAAATGTTTGCAGTCAATGAATCATGCTTTGCAGCCATTCAAGAGCAGTTTCCACATATTGCTGCCCATCGGATTCATGATACAATATTTGAAGTAACCAGATCAGTTTTTAGACAAAATGTTCTGGAAAGAGCCCAAAGATGTGATGGACGTCCCTTTGATGCCCTCCGACCCACTAAATGTGAGGTTGATTTGTTTAAAAGTCTTCATGGGTCATCTTTATTTCAAAGAGGAGAGACACAGGTGTTCTGCACAGCAACACTTGGATCTCGTCGTTCAGCAAGACAACGTGATGTAGCAGAAGTGGCTGTGGGGTGTAGAAATAGTTCTGGTCAagagcatctcatccaggggggagtagcgAGAGAAGCCAGAGTTCAGCTCCTGAGATATTACTTTTGCTTGACAAAGACTTCCCATTTGTTGATGGTTTGCTGGCATTTCAGTGTTGTCAAGTTTTGttccctttttcttctttctttctcaaATTTTTGCAGGGATGTAAGAGAAAAGCCATTCATGCTGCACTATGAGTTTCCACCGTTTTGTGTGAAGGAAATTGGATTTTCTAGTGGATACAGTAGACGAGAGATTGGTCATGGAAATTTAGCGGAAATGGCCTTAGAACCAGTTGTTCCCAAGGATTTCCCATTTGCCATTCGGCTTACATCTCAGGTGTTAGAATCGAATGGTTCTTCGTCGTTAGCATCCGTTTGTGCGGGCAGTTTGACACTGATGGATGCAGGGATCCCAATCACTCGTCCTGTCGGAGGGGTTTCCTGTGGTCTGATAACAAGCAGTGATGCCGAGGATACAGATAAAGAAGACATCAAGCAGTATCGTCTGATCACTGATATCTTGGGCATCGAGGACTACATGGGTGATATGGACTTTAAACTAGCTGGAAGCCGACAAGGGATAACAGCTCTTCAGGCTGATTTCAAGGTCCCAGGCCTCCCGCTATACATTGTAGAAGAAGCAGTAACAAAAGCAACAGATGATAGAATGAAAGTTTTGGATATTATTGAAGAATGTCAGAGCGAGGCCAGGAACACTCCCAAGGACAATGCACCGGCAGTCGAAACCGTGGTTGTTCCTCGAAACAACGTCAAAAAGCTGCTTGGTGCTGGAGCAAAGGTCCTGAAAAACTTAGAGGAAGAAACAGGTACTGACATCAATCGGATTGATGAAGACcagttttctgtttttgctCCAAACGCTAAAGCTCTCAAAGAAGCGGTGGACAGGATCAATGAAATCACAACAATAAAGTCCTGGACAGATGCTCTGGAAGTTGGAGCTACATACACCACAAAAGTTGTTGATGTCAGGGACTATGGTGTGATGGTGGAGATCCTGCCAGACGCGCCCAGCGTTCTTTTACACTCCTCCGAGATGTCTCACGGCAAGGCCAGTAATCCCTCGAAGAAATTTACTAAAGGAGAAAGTGTTGATGTGGTGTACATTGGAAAGGATGAACTCACGGGGCGACCACGGATTTCAGCAAAATCGCTTTCTTCGAAAACTCGCGACAGCATGAATATTGACGAATTTGTCGCAACTTATCTTAAATAG

Transcript

ENSSYXT00000017953

gcggctcttGCGAGTTCTCGCGCAAAGTTGGACAAGGGGTATTTTTTTGCATTGCGAAGTGCACTGAAGAGATTTAGAAGGTGTAAAAATACAGAATGTGCTGTTGAATTTGAAATTGGTCACCGCATGGAGAGAATTCCACCTTGGTTACTGCTGTAAGTGAGAAGACATCCACAGATACCAATGGAAGAGGTTTGCCCCTGTTGGTTGATTATAAAGAAAAGGCAGCTGCTGGGGGACAGATTCCCAGGAACTTCTTTAGGAAAGATGCAAGAATGTCTGATAGAGAAACTCTTGTTAGCAGACGTATGGGTCACGAGCAGTTTGTGGGCAGCTGATGGACTCCACGATCCTGATATTGCTGCCATAAATGGAGccTCTGCAGCACTTGCAGTTTCTGATATTCCTTGGAGTGGTCCTGTAGGTGCGGTGAGAGTAGGAGAGATTGATGGAGCGTTTGTCATCAATCCCACGTGGTCAGAGCTTGACAGCAGCAAGCTGAACCTTGTTATTGCATGCAGTGAAAGGAAAGTTGTGATGGTGGAAGCATTTGCCCAAGAAGTGAGTTCTGAGAGGTTTTGTGAAGCTCTTAGGTTTGGATTCAAAGAGTGCCAACCTATAATCAAAGCTTTGCGTGATTTGCAAAGCCAAGGTGGCAAGAAAAAGAGAACTTGTGAAGTTCTTGACATGCCTGTAGAAGTGCTGGATGCAGTGAAGAGACATTCAGTAGAGCAACTTGATAGGATATTTTCAAACTTCACTTACTCAAAGATGGAACGTGACAGAGAAATGTTTGCAGTCAATGAATCATGCTTTGCAGCCATTCAAGAGCAGTTTCCACATATTGCTGCCCATCGGATTCATGATACAATATTTGAAGTAACCAGATCAGTTTTTAGACAAAATGTTCTGGAAAGAGCCCAAAGATGTGATGGACGTCCCTTTGATGCCCTCCGACCCACTAAATGTGAGGTTGATTTGTTTAAAAGTCTTCATGGGTCATCTTTATTTCAAAGAGGAGAGACACAGGTGTTCTGCACAGCAACACTTGGATCTCGTCGTTCAGCAAGACAACGTGATGTAGCAGAAGTGGCTGTGGGGTGTAGAAATAGTTCTGGTCAagagcatctcatccaggggggagtagcgAGAGAAGCCAGAGTTCAGCTCCTGAGATATTACTTTTGCTTGACAAAGACTTCCCATTTGTTGATGGTTTGCTGGCATTTCAGTGTTGTCAAGTTTTGttccctttttcttctttctttctcaaATTTTTGCAGGGATGTAAGAGAAAAGCCATTCATGCTGCACTATGAGTTTCCACCGTTTTGTGTGAAGGAAATTGGATTTTCTAGTGGATACAGTAGACGAGAGATTGGTCATGGAAATTTAGCGGAAATGGCCTTAGAACCAGTTGTTCCCAAGGATTTCCCATTTGCCATTCGGCTTACATCTCAGGTGTTAGAATCGAATGGTTCTTCGTCGTTAGCATCCGTTTGTGCGGGCAGTTTGACACTGATGGATGCAGGGATCCCAATCACTCGTCCTGTCGGAGGGGTTTCCTGTGGTCTGATAACAAGCAGTGATGCCGAGGATACAGATAAAGAAGACATCAAGCAGTATCGTCTGATCACTGATATCTTGGGCATCGAGGACTACATGGGTGATATGGACTTTAAACTAGCTGGAAGCCGACAAGGGATAACAGCTCTTCAGGCTGATTTCAAGGTCCCAGGCCTCCCGCTATACATTGTAGAAGAAGCAGTAACAAAAGCAACAGATGATAGAATGAAAGTTTTGGATATTATTGAAGAATGTCAGAGCGAGGCCAGGAACACTCCCAAGGACAATGCACCGGCAGTCGAAACCGTGGTTGTTCCTCGAAACAACGTCAAAAAGCTGCTTGGTGCTGGAGCAAAGGTCCTGAAAAACTTAGAGGAAGAAACAGGTACTGACATCAATCGGATTGATGAAGACcagttttctgtttttgctCCAAACGCTAAAGCTCTCAAAGAAGCGGTGGACAGGATCAATGAAATCACAACAATAAAGTCCTGGACAGATGCTCTGGAAGTTGGAGCTACATACACCACAAAAGTTGTTGATGTCAGGGACTATGGTGTGATGGTGGAGATCCTGCCAGACGCGCCCAGCGTTCTTTTACACTCCTCCGAGATGTCTCACGGCAAGGCCAGTAATCCCTCGAAGAAATTTACTAAAGGAGAAAGTGTTGATGTGGTGTACATTGGAAAGGATGAACTCACGGGGCGACCACGGATTTCAGCAAAATCGCTTTCTTCGAAAACTCGCGACAGCATGAATATTGACGAATTTGTCGCAACTTATCTTAAATAGTTGCTGAATTAAAAGAAAGATCGGAAATGGTCAACACTGGACAAGGTGTGAGAAGAAGTGAAGCGTAGTGCAACACGACACTGAAACACCCAATCGTTCACTCAAGTGAACAGCTATCGACAGCCAGTCATTCCGGATGAATTTGTTGCTTTACATTATATATCTGGGATGAACTCTTCATCATCTGGCCGGGCAGCCAGTTGCACCGATAACCGCGGGCGGAAACTAGTCGTACCTCAAGCTGCCGACTCCTGGGCAGGAATTCCAGGTTTCGCGCAAGCAACAAAGCTGTGAATGACGCCTGGCAGAACTTGCAGCTTTACTATTATAATCGCGTGGAACTTGTAAAATCCAGAAGCTTATGCTCGCACCTCTTAGTTTATCAGCTTGTGGAACAATTGTGAAGACAATGGGTCTCATCTAATTAGCTATATCCGTTGACAACAACTCAGCAATGGAATTCAGCGACAGAGTGATGAAAGCCTGATGTTTAAGTACAACattaaaattgaattaaaatatCGTGGCGTAGCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TCS8	Polyribonucleotide nucleotidyltransferase 1, mitochondrial OS=Homo sapiens OX=9606 GN=PNPT1 PE=1 SV=2
Q5RCW2	Polyribonucleotide nucleotidyltransferase 1, mitochondrial OS=Pongo abelii OX=9601 GN=PNPT1 PE=2 SV=2
Q8K1R3	Polyribonucleotide nucleotidyltransferase 1, mitochondrial OS=Mus musculus OX=10090 GN=Pnpt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004215 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03726 all species →	PNPase	Polyribonucleotide nucleotidyltransferase, RNA binding domain	Domain	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF03725 all species →	RNase_PH_C	3' exoribonuclease family, domain 2	Domain	Interproscan
PF01138 all species →	RNase_PH	3' exoribonuclease family, domain 1	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR036456 all species →	Homologous_superfamily	Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily	Interproscan
IPR027408 all species →	Homologous_superfamily	PNPase/RNase PH domain superfamily	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR015848 all species →	Domain	Polyribonucleotide nucleotidyltransferase, RNA-binding domain	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR015847 all species →	Domain	Exoribonuclease, phosphorolytic domain 2	Interproscan
IPR036345 all species →	Homologous_superfamily	Exoribonuclease, PH domain 2 superfamily	Interproscan
IPR001247 all species →	Domain	Exoribonuclease, phosphorolytic domain 1	Interproscan
IPR012162 all species →	Family	Polyribonucleotide nucleotidyltransferase	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11252 all species →	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000958 all species →	Biological Process	mitochondrial mRNA catabolic process	Interproscan
GO:0000965 all species →	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0004654 all species →	Molecular Function	polyribonucleotide nucleotidyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000017074.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.