Genomic Location: chr6:36299956...36301227
NR annotation: XP_020603519.1, COMM domain-containing protein 1-like isoform X1 [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families
| CDS |
| ENSSYXT00000018136 |
| Transcript |
| ENSSYXT00000018136 |
| Protein |
| ENSSYXP00000017245.1 |
| UniProt accession | Description |
|---|---|
| Q8K4M5 | COMM domain-containing protein 1 OS=Mus musculus OX=10090 GN=Commd1 PE=1 SV=2 |
| Q2M2T5 | COMM domain-containing protein 1 OS=Bos taurus OX=9913 GN=COMMD1 PE=2 SV=1 |
| Q8N668 | COMM domain-containing protein 1 OS=Homo sapiens OX=9606 GN=COMMD1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009128 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07258 all species → | COMM_domain | COMM domain | Domain | Interproscan |
| PF17221 all species → | COMMD1_N | COMMD1 N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017920 all species → | Domain | COMM domain | Interproscan |
| IPR033776 all species → | Domain | COMMD1 N-terminal domain | Interproscan |
| IPR037351 all species → | Family | COMM domain-containing protein 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21199 all species → | COMM DOMAIN-CONTAINING PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005768 all species → | Cellular Component | endosome | Interproscan |
| GO:0031398 all species → | Biological Process | positive regulation of protein ubiquitination | Interproscan |
| GO:0032434 all species → | Biological Process | regulation of proteasomal ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0055070 all species → | Biological Process | copper ion homeostasis | Interproscan |
| GO:1902306 all species → | Biological Process | negative regulation of sodium ion transmembrane transport | Interproscan |
| GO:2000009 all species → | Biological Process | negative regulation of protein localization to cell surface | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22557 | COMMD1, MURR1; COMM domain containing 1 | - | Ubiquitin system | ko04121 | deepkoala |
Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
