Gene detail

Detailed information of ENSSYXP00000018565.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: KAJ7374681.1, hypothetical protein OS493_005023 [Desmophyllum pertusum]
Species Micromussa lordhowensis · all data for this species · gene families

Sequence

CDS

Transcript

ENSSYXT00000019560

CAGGAATCAAGATGGCGGTAGTCAACAAGAATTCCGCCTTTATTAAATACTCGCATTTGTATCACCAAAAATGCCTCCTTTTCAGTAGTGCGATTTGACTTTTTTGAATTGGAAAGAATGGATGACTATGGAGAAGATGTTGGTTGGGATGAAGCAGCTCTCAGTCCATCAGATGAGAAAAGAGACAATGAAGTTGTTATACAGGAGTGCATGCAAAACTTTGCAACTAAAGATTTCATCATGGAACCTGACATTTTCAACAATATCAGGAGGTATTTCCAAGCAGGGGGAATCCATGAAGAAATGGTGAAGCTGTTATCAGAAAATTACACTGGAATAGCTCAGAGTACAAACCTCTTGGCGAACTGGTTGATTGTAACAGGAGCTAAAGTACCAGATGTTGAACAGATGGTTGAAAATCACCTGGAAACTCTCATTATTAAGTACTTCGATCCCAAAAAAGCTGACTCTATCTTTTCAGCTGAGGGTGAGACACCATCTTGGTTAGAAGACATGATTGTTCATCAGACATGGCGTTCCATGTTTTATAAGCTGGCTGAGCACTATCCAGACTGTCTGATGCTCAATTTTACTATTAAGTTAATATCAGATGCAGGATATCAAGGAGAGATCACCAGTGTGTCAACAGCATGCCATCAAATTGAGGTGTTTTCTCGAGTGCTCAAAACTTCAGCTTCTACATTTCTAGAGGAAGGGGAACAAACTATGGACAATAACCTGCCAGAATTTTCTagGATGGTTTGTTTTGGACAGCACACTTACCTATATGCACAGTGTTTATTGAATCATATCGCTCAAGACACAGATGGAGGAACTAAACTTAAGAGGCTCAGTCAAGAACTTCAAAAGAAAGCAGTTGAAAGTGGACATGAAGTAACAGAGATCACGCTGTCATTGAATGGAGCAGCAACGTATCCTCGTGCAAGTGCTGCTCTTTCTTCCATGTTGGGAAAAAATTCCCTTAACCCAGGGGACATCACAGTGCTATACAAGTTGTTCAGTAGTTCCCAGGCTCCTCCTTGTGCCATCATCAGAGTGCCACAGTTTTTGGAGCTTCTACTGGAAGCTTTATTCAAACCTGGTCAACACTTAAATCCAGAACACAAGTTTAAATATGTTTACCTGCTGGCATATGCTGCATCTGTCCATGAAACATGGATTGAAAATGAACGAACAATGCTGAACAGAGATGAACTAAAAACAACTTCCCAAGCAATAGATAAGATACACTTACTGTGTGTGCAGGAGACCAAGAAAGGCTCCCAGCTGTTAGCTGAAGTGGGTGTCCTGTTTCAGTGCATAAGGTTTCCTGTGGTAGCCATGGGTTTGTTAAAATGGGTTGATTGTACTGTATGTGATCCATCGTTCTTTAAGCTTCTCACAGACTCAACACCAGTCCATTTGGCTCTGTTAGATGAGATTAGTTCTTGCCATGCTCTACAGCATCGTCTGGTGCTTAATGTACTGATCCGTTTGTTTGAGTCGCCAACACCATTAGACACTTTGGTAGAGCTTGAGTTCAAGAAAACAGTTCTGGATCGAATGATTCATCTTCTGAGCCGAGGATATGTAGTGCCAGTCATCAGCTACATTAACAGCTGTTTGGAAAAGCAAAACACCGATAACTCGCTCGTAAGACATTTCGTGACTGAGGTTTTAGAAATGATTGCTCCTCCGTACTCGACCGAGTTCGTCCAGCTTTTCCTTCCCATCGTTCGTAACGAGGAGATCACCGGGAGACTGCGCAATGCTGACCACACTGATGACGTGTCACTGTTTTTAGGTCACTGTGCTCAGCAGGCAGGAGTGTAAAGTACAAAGATTAACCACCGCTTGTGGATGAAATACACTGTCTAATTTAGCAGCAAGCTTCAAAATGGCGGTCATCAACAACCGCGAAGGCCTGGAGTAACCGTGAACCACCGCGAAGGCCTGGAGTCAAGCACCAAGTGGTCTGACTAACAAGAGACAAACAGCTATTTGATGTTGTTTGTCTGCAAAAAGTACAATGTGAAAGAAATCATTATATAAGGTGAAAATGTTTTACACAGTTTATTTGCATGGCGGTCATCGATGGTGCCTTTTCTCGGAGCAGCAGTAATTCCGACAGTATTCATATGATGAAAAATAAAGACAGCGAGGTGAAcaaaaaagaattttttttcagagtgGCCACTTTATTCAGTTATCAGGCATATTAAACGAATATTGATTGAGCTCGAGATTCAGTTAGGGAGTTTTGTGCTATGTAATATAACATATTCAATGACAAGCTCACTTTTGACCAGGGCCTGCCATCTTTGATTGGAAAGAAGCATACTAGCCTTTTGGAGATGAGTTGGCTAAATTAAAGCAACTGTGCGAATTTAATTTTTGATGATGCGTTTATTAACGTTCATTTCTTTTCCCTGAGTTACATAAAACGATCAAAgtttcttctgtttctgtgGCAGGGGATCTggaaataaactgaaaacaaaatttgtaTCAATACATGTCTAGTGTGGATGGAACTATAAGCCACACGACCTATTCGTCTGGTTATAGGAAATATCTTTCGGTTATAGCCATGTTTCCCCTTGGTCGTACACGGTCCTGGAAAAGGTTCTGCCTTCTTGAAGAAAATATCGAAACAAGTTTCGAATTCTAATTAACTTTCTGTGTATGAAGAAAGAAGGTGAGCCCATTAGTGTACAATTAGTCTCTGTTCTATAAATCCACttataccaagaattttgaaataaaatgaattgtcg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IXH7	Negative elongation factor C/D OS=Homo sapiens OX=9606 GN=NELFCD PE=1 SV=2
Q5RFA0	Negative elongation factor D OS=Pongo abelii OX=9601 GN=NELFCD PE=2 SV=1
A5GFY4	Negative elongation factor D OS=Sus scrofa OX=9823 GN=NELFCD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005020 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04858 all species →	TH1	TH1 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006942 all species →	Family	TH1 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12144 all species →	NEGATIVE ELONGATION FACTOR D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032021 all species →	Cellular Component	NELF complex	Interproscan
GO:0034244 all species →	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15181	TH1L, NELFD; negative elongation factor C/D	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.